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SlotAnnotation

SlotAnnotation classes should be used when we need to attach metadata (in particular evidence and provenance) to a slot in the context of its referencing class, that can not be fully captured using an Association between the full class itself, and a Reference. Evidence and provenance can exist here in the form of an evidence code or a Reference (e.g. a publication). SlotAnnotation classes are used where the slot is not referencing a class in and of itself, and often has a scalar range.

classDiagram AuditedObject <|-- SlotAnnotation SlotAnnotation : created_by SlotAnnotation : date_created SlotAnnotation : date_updated SlotAnnotation : db_date_created SlotAnnotation : db_date_updated SlotAnnotation : evidence SlotAnnotation : internal SlotAnnotation : obsolete SlotAnnotation : updated_by

URI: alliance:SlotAnnotation

Parent Classes

Children

Slots

Name Description
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence The evidence that supports some assertion.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:SlotAnnotation']
native ['alliance:SlotAnnotation']

LinkML Specification

Direct

name: SlotAnnotation
description: SlotAnnotation classes should be used when we need to attach metadata
  (in particular evidence and provenance) to a slot in the context of its referencing
  class, that can not be fully captured using an Association between the full class
  itself, and a Reference. Evidence and provenance can exist here in the form of an
  evidence code or a Reference (e.g. a publication). SlotAnnotation classes are used
  where the slot is not referencing a class in and of itself, and often has a scalar
  range.
notes:
- A good example of the use of a SlotAnnotation class is the use case of attributing
  one of many functional impacts of an allele to a publication.  AlleleFunctionalImpact
  is the SlotAnnotation class that represents this use case.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- evidence

Induced

name: SlotAnnotation
description: SlotAnnotation classes should be used when we need to attach metadata
  (in particular evidence and provenance) to a slot in the context of its referencing
  class, that can not be fully captured using an Association between the full class
  itself, and a Reference. Evidence and provenance can exist here in the form of an
  evidence code or a Reference (e.g. a publication). SlotAnnotation classes are used
  where the slot is not referencing a class in and of itself, and often has a scalar
  range.
notes:
- A good example of the use of a SlotAnnotation class is the use case of attributing
  one of many functional impacts of an allele to a publication.  AlleleFunctionalImpact
  is the SlotAnnotation class that represents this use case.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
attributes:
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    owner: SlotAnnotation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: Reference
    multivalued: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    owner: SlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean