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ChangeEventSlotAnnotation

A major change to an entity: e.g., new, merge, split, rename, deprecation. Proposed event_type vocabulary below. new - The entity was created (excluding new entities from split/merges). merge - The entity subsumed other entities in a merge; objects subsumed in the merge get deprecation type ChangeEvent annotations. split - The entity was split from another entity; objects deprecated in the split get deprecation type ChangeEvent annotations. deprecation - The entity was made obsolete. This may include objects deprecated by some merge/split event. rename - A current accepted name of the entity was changed. Proposed status vocabulary: provisional/approved.

classDiagram SlotAnnotation <|-- ChangeEventSlotAnnotation ChangeEventSlotAnnotation : acquires_in_merge ChangeEventSlotAnnotation : created_by ChangeEventSlotAnnotation : current_version ChangeEventSlotAnnotation : date_created ChangeEventSlotAnnotation : date_updated ChangeEventSlotAnnotation : db_date_created ChangeEventSlotAnnotation : db_date_updated ChangeEventSlotAnnotation : event_status ChangeEventSlotAnnotation : event_type ChangeEventSlotAnnotation : evidence ChangeEventSlotAnnotation : full_name_renamed_from ChangeEventSlotAnnotation : full_name_renamed_to ChangeEventSlotAnnotation : internal ChangeEventSlotAnnotation : merged_into ChangeEventSlotAnnotation : obsolete ChangeEventSlotAnnotation : related_notes ChangeEventSlotAnnotation : split_from ChangeEventSlotAnnotation : split_into ChangeEventSlotAnnotation : symbol_renamed_from ChangeEventSlotAnnotation : symbol_renamed_to ChangeEventSlotAnnotation : updated_by

URI: alliance:ChangeEventSlotAnnotation

Parent Classes

Children

Slots

Name Description
acquires_in_merge For an entity that persists through a merge, the list of entities that it subsumes in a given NomenclatureEvent.
created_by The individual that created the entity.
current_version The current version of the entity, generated by this nomenclature event. It starts at one, and is incremented by one with every major change.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
event_status Status for an event change: provisional or approved.
event_type Category of major change event for an entity.
evidence The evidence that supports some assertion.
full_name_renamed_from The previous full_name for a renamed entity.
full_name_renamed_to The new full_name for a renamed entity.
internal Classifies the entity as private (for internal use) or not (for public use).
merged_into For an entity deprecated by a merge, the entity into which it was merged.
obsolete Entity is no longer current.
related_notes Holds between an object and a list of related Note objects.
split_from For an entity generated by a split, the entity from which it was split.
split_into For an entity deprecated by a split, the list of entities generated from the split.
symbol_renamed_from The previous symbol for a renamed entity.
symbol_renamed_to The new symbol for a renamed entity.
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:ChangeEventSlotAnnotation']
native ['alliance:ChangeEventSlotAnnotation']

LinkML Specification

Direct

name: ChangeEventSlotAnnotation
description: 'A major change to an entity: e.g., new, merge, split, rename, deprecation.
  Proposed event_type vocabulary below. new - The entity was created (excluding new
  entities from split/merges). merge - The entity subsumed other entities in a merge;
  objects subsumed in the merge get deprecation type ChangeEvent annotations. split
  - The entity was split from another entity; objects deprecated in the split get
  deprecation type ChangeEvent annotations. deprecation - The entity was made obsolete.
  This may include objects deprecated by some merge/split event. rename - A current
  accepted name of the entity was changed. Proposed status vocabulary: provisional/approved.'
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- ChangeEvent
- EventHistoryEntry
- NomenclatureEvent
is_a: SlotAnnotation
abstract: true
slots:
- event_type
- event_status
- current_version
- related_notes
- acquires_in_merge
- merged_into
- split_from
- split_into
- symbol_renamed_to
- symbol_renamed_from
- full_name_renamed_to
- full_name_renamed_from
slot_usage:
  event_status:
    name: event_status
    required: false
  current_version:
    name: current_version
    required: false

Induced

name: ChangeEventSlotAnnotation
description: 'A major change to an entity: e.g., new, merge, split, rename, deprecation.
  Proposed event_type vocabulary below. new - The entity was created (excluding new
  entities from split/merges). merge - The entity subsumed other entities in a merge;
  objects subsumed in the merge get deprecation type ChangeEvent annotations. split
  - The entity was split from another entity; objects deprecated in the split get
  deprecation type ChangeEvent annotations. deprecation - The entity was made obsolete.
  This may include objects deprecated by some merge/split event. rename - A current
  accepted name of the entity was changed. Proposed status vocabulary: provisional/approved.'
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- ChangeEvent
- EventHistoryEntry
- NomenclatureEvent
is_a: SlotAnnotation
abstract: true
slot_usage:
  event_status:
    name: event_status
    required: false
  current_version:
    name: current_version
    required: false
attributes:
  event_type:
    name: event_type
    description: Category of major change event for an entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: event_type
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    range: VocabularyTerm
    required: true
    multivalued: false
  event_status:
    name: event_status
    description: 'Status for an event change: provisional or approved.'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: event_status
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    range: VocabularyTerm
    required: false
    multivalued: false
  current_version:
    name: current_version
    description: The current version of the entity, generated by this nomenclature
      event. It starts at one, and is incremented by one with every major change.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: current_version
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: integer
    required: false
    multivalued: false
  related_notes:
    name: related_notes
    description: Holds between an object and a list of related Note objects.
    notes:
    - The original name suggested for this slot was simply notes, but I think that
      label is reserved in LinkML for internal descriptions of objects, hence the
      related_notes label used here.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: related_notes
    owner: ChangeEventSlotAnnotation
    domain_of:
    - SubmittedObject
    - ChangeEventSlotAnnotation
    - ExpressionExperiment
    - Gene
    - ConstructComponentSlotAnnotation
    - ConstructGenomicEntityAssociation
    - ConstructCassetteAssociation
    - CassetteComponentSlotAnnotation
    - CassetteGenomicEntityAssociation
    - CassetteTransgenicToolAssociation
    - CassetteStrAssociation
    - Annotation
    - HTPExpressionDatasetSampleAnnotation
    range: Note
    multivalued: true
  acquires_in_merge:
    name: acquires_in_merge
    description: For an entity that persists through a merge, the list of entities
      that it subsumes in a given NomenclatureEvent.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: acquires_in_merge
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    range: string
    required: false
    multivalued: true
  merged_into:
    name: merged_into
    description: For an entity deprecated by a merge, the entity into which it was
      merged.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: merged_into
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    range: string
    required: false
    multivalued: false
  split_from:
    name: split_from
    description: For an entity generated by a split, the entity from which it was
      split.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: split_from
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    range: string
    required: false
    multivalued: false
  split_into:
    name: split_into
    description: For an entity deprecated by a split, the list of entities generated
      from the split.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: split_into
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    range: string
    required: false
    multivalued: true
  symbol_renamed_to:
    name: symbol_renamed_to
    description: The new symbol for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: symbol_renamed_to
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  symbol_renamed_from:
    name: symbol_renamed_from
    description: The previous symbol for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: symbol_renamed_from
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  full_name_renamed_to:
    name: full_name_renamed_to
    description: The new full_name for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: full_name_renamed_to
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  full_name_renamed_from:
    name: full_name_renamed_from
    description: The previous full_name for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: full_name_renamed_from
    owner: ChangeEventSlotAnnotation
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence
    owner: ChangeEventSlotAnnotation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
    multivalued: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: created_by
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: updated_by
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ChangeEventSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean