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SystematicNameSlotAnnotationDTO

None

classDiagram NameSlotAnnotationDTO <|-- SystematicNameSlotAnnotationDTO SystematicNameSlotAnnotationDTO : created_by_curie SystematicNameSlotAnnotationDTO : date_created SystematicNameSlotAnnotationDTO : date_updated SystematicNameSlotAnnotationDTO : db_date_created SystematicNameSlotAnnotationDTO : db_date_updated SystematicNameSlotAnnotationDTO : display_text SystematicNameSlotAnnotationDTO : evidence_curies SystematicNameSlotAnnotationDTO : format_text SystematicNameSlotAnnotationDTO : internal SystematicNameSlotAnnotationDTO : name_type_name SystematicNameSlotAnnotationDTO : obsolete SystematicNameSlotAnnotationDTO : synonym_scope_name SystematicNameSlotAnnotationDTO : synonym_url SystematicNameSlotAnnotationDTO : updated_by_curie

URI: alliance:SystematicNameSlotAnnotationDTO

Parent Classes

Slots

Name Description
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
display_text A version of a synonym string for display. Any UTF8 character is permitted.
evidence_curies Curies of InformationContentEntity objects given as evidence
format_text A version of a synonym string using only ASCII characters, which is easier to type (for searches), print and parse. For example, Greek characters are transliterated.
internal Classifies the entity as private (for internal use) or not (for public use).
name_type_name Name of the VocabularyTerm representing the name type of the synonym - proposed values are nomenclature_symbol / full_name / systematic_name / ncbi_protein_name / uniform / non_uniform / retired_name / unspecified
obsolete Entity is no longer current.
synonym_scope_name Name of the VocabularyTerm representing the scope of the synonym - permissible values are narrow / broad / related / exact
synonym_url URL for a synonym: e.g., NCBI URL for the NCBI synonym of an object.
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:SystematicNameSlotAnnotationDTO']
native ['alliance:SystematicNameSlotAnnotationDTO']

LinkML Specification

Direct

name: SystematicNameSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: NameSlotAnnotationDTO
slot_usage:
  name_type_name:
    name: name_type_name
    domain_of:
    - NameSlotAnnotationDTO
    any_of:
    - equals_string: systematic_name

Induced

name: SystematicNameSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: NameSlotAnnotationDTO
slot_usage:
  name_type_name:
    name: name_type_name
    domain_of:
    - NameSlotAnnotationDTO
    any_of:
    - equals_string: systematic_name
attributes:
  name_type_name:
    name: name_type_name
    description: Name of the VocabularyTerm representing the name type of the synonym
      - proposed values are nomenclature_symbol / full_name / systematic_name / ncbi_protein_name
      / uniform / non_uniform / retired_name / unspecified
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: NameSlotAnnotationDTO
    alias: name_type_name
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - NameSlotAnnotationDTO
    range: string
    required: true
    any_of:
    - equals_string: systematic_name
  format_text:
    name: format_text
    description: A version of a synonym string using only ASCII characters, which
      is easier to type (for searches), print and parse. For example, Greek characters
      are transliterated.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - synonym_text
    multivalued: false
    alias: format_text
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - NameSlotAnnotation
    - NameSlotAnnotationDTO
    range: string
    required: true
  display_text:
    name: display_text
    description: A version of a synonym string for display. Any UTF8 character is
      permitted.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - synonym_sgml
    multivalued: false
    alias: display_text
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - NameSlotAnnotation
    - NameSlotAnnotationDTO
    range: string
    required: true
  synonym_url:
    name: synonym_url
    description: 'URL for a synonym: e.g., NCBI URL for the NCBI synonym of an object.'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: synonym_url
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - NameSlotAnnotation
    - NameSlotAnnotationDTO
    range: uri
  synonym_scope_name:
    name: synonym_scope_name
    description: Name of the VocabularyTerm representing the scope of the synonym
      - permissible values are narrow / broad / related / exact
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: NameSlotAnnotationDTO
    alias: synonym_scope_name
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - NameSlotAnnotationDTO
    range: string
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence_curies
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: SystematicNameSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean