StrGeneAssociation

The relationship between a Sequence Targeting Reagent and its targeted genes. The relation should be a VocabularyTerm with one of the following values - targets

classDiagram StrAssociation <|-- StrGeneAssociation StrGeneAssociation : created_by StrGeneAssociation : date_created StrGeneAssociation : date_updated StrGeneAssociation : db_date_created StrGeneAssociation : db_date_updated StrGeneAssociation : evidence StrGeneAssociation : internal StrGeneAssociation : obsolete StrGeneAssociation : relation StrGeneAssociation : str_association_subject StrGeneAssociation : str_gene_association_object StrGeneAssociation : updated_by

URI: alliance:StrGeneAssociation

Parent Classes

AuditedObject
- Association
  - EvidenceAssociation
    - StrAssociation
      - StrGeneAssociation

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence	The evidence that supports some assertion.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
relation	A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
str_association_subject	None
str_gene_association_object	None
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:StrGeneAssociation']
native	['alliance:StrGeneAssociation']

LinkML Specification

Direct

name: StrGeneAssociation
description: The relationship between a Sequence Targeting Reagent and its targeted
  genes. The relation should be a VocabularyTerm with one of the following values
  - targets
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: StrAssociation
slot_usage:
  relation:
    name: relation
    range: VocabularyTerm
attributes:
  str_gene_association_object:
    name: str_gene_association_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    domain_of:
    - StrGeneAssociation
    range: Gene
    required: true

Induced

name: StrGeneAssociation
description: The relationship between a Sequence Targeting Reagent and its targeted
  genes. The relation should be a VocabularyTerm with one of the following values
  - targets
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: StrAssociation
slot_usage:
  relation:
    name: relation
    range: VocabularyTerm
attributes:
  str_gene_association_object:
    name: str_gene_association_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    alias: str_gene_association_object
    owner: StrGeneAssociation
    domain_of:
    - StrGeneAssociation
    range: Gene
    required: true
  str_association_subject:
    name: str_association_subject
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    alias: str_association_subject
    owner: StrGeneAssociation
    domain_of:
    - StrAssociation
    range: SequenceTargetingReagent
    required: true
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence
    owner: StrGeneAssociation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
    multivalued: true
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    exact_mappings:
    - biolink:predicate
    is_a: association_slot
    alias: relation
    owner: StrGeneAssociation
    domain_of:
    - Association
    - ConstructComponentSlotAnnotation
    - CassetteComponentSlotAnnotation
    range: VocabularyTerm
    required: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: created_by
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: updated_by
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: StrGeneAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean