StrAssociationDTO

Base class for STR association DTOs

classDiagram EvidenceAssociationDTO <|-- StrAssociationDTO StrAssociationDTO : created_by_curie StrAssociationDTO : date_created StrAssociationDTO : date_updated StrAssociationDTO : db_date_created StrAssociationDTO : db_date_updated StrAssociationDTO : evidence_curies StrAssociationDTO : internal StrAssociationDTO : obsolete StrAssociationDTO : sequence_targeting_reagent_identifier StrAssociationDTO : updated_by_curie

URI: alliance:StrAssociationDTO

Parent Classes

AuditedObjectDTO
- EvidenceAssociationDTO
  - StrAssociationDTO
    - StrGeneAssociationDTO

Children

AuditedObjectDTO
- EvidenceAssociationDTO
  - StrAssociationDTO
    - StrGeneAssociationDTO

Slots

Name	Description
created_by_curie	Curie of the Person object representing the individual that created the entity
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_curies	Curies of InformationContentEntity objects given as evidence
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
sequence_targeting_reagent_identifier	Identifier (curie/primary_external_id/mod_internal_id) of the STR
updated_by_curie	Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type	Mapped Value
self	['alliance:StrAssociationDTO']
native	['alliance:StrAssociationDTO']

LinkML Specification

Direct

name: StrAssociationDTO
description: Base class for STR association DTOs
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
abstract: true
slots:
- sequence_targeting_reagent_identifier

Induced

name: StrAssociationDTO
description: Base class for STR association DTOs
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
abstract: true
attributes:
  sequence_targeting_reagent_identifier:
    name: sequence_targeting_reagent_identifier
    description: Identifier (curie/primary_external_id/mod_internal_id) of the STR
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: StrAssociationDTO
    alias: sequence_targeting_reagent_identifier
    owner: StrAssociationDTO
    domain_of:
    - AgmStrAssociationDTO
    - StrAssociationDTO
    - CassetteStrAssociationDTO
    range: string
    required: true
    multivalued: false
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence_curies
    owner: StrAssociationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
    multivalued: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: StrAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: StrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: StrAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: StrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: StrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: StrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: StrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: StrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean