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SingleCellExpressionCellClusterDTO

Ingest class for a cluster of cells derived algorithmically from single cell expression

classDiagram SubmittedObjectDTO <|-- SingleCellExpressionCellClusterDTO SingleCellExpressionCellClusterDTO : cell_count SingleCellExpressionCellClusterDTO : cell_type_curie SingleCellExpressionCellClusterDTO : created_by_curie SingleCellExpressionCellClusterDTO : data_provider_dto SingleCellExpressionCellClusterDTO : date_created SingleCellExpressionCellClusterDTO : date_updated SingleCellExpressionCellClusterDTO : db_date_created SingleCellExpressionCellClusterDTO : db_date_updated SingleCellExpressionCellClusterDTO : internal SingleCellExpressionCellClusterDTO : mod_internal_id SingleCellExpressionCellClusterDTO : note_dtos SingleCellExpressionCellClusterDTO : obsolete SingleCellExpressionCellClusterDTO : primary_external_id SingleCellExpressionCellClusterDTO : symbol SingleCellExpressionCellClusterDTO : title SingleCellExpressionCellClusterDTO : updated_by_curie

URI: alliance:SingleCellExpressionCellClusterDTO

Parent Classes

Slots

Name Description
cell_count The count of cells that are part of an analysis or cell cluster
cell_type_curie None
created_by_curie Curie of the Person object representing the individual that created the entity
data_provider_dto Ingest object representing the organization (e.g. MOD) from which the data was sourced and a CrossReference to that organisation's site
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal Classifies the entity as private (for internal use) or not (for public use).
mod_internal_id The model organism database (MOD) internal identifier for the object
note_dtos None
obsolete Entity is no longer current.
primary_external_id The primary external (non-Alliance) database identifier/curie for the object. Note that this may be an external (non-Alliance member) identifier for an object, like a UniProt ID for a protein, and may act as the MOD's/Alliance member's primary key for the entity.
symbol The free text symbol (human-readable) for an entity or record
title The free text title for an entity or record
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:SingleCellExpressionCellClusterDTO']
native ['alliance:SingleCellExpressionCellClusterDTO']

LinkML Specification

Direct

name: SingleCellExpressionCellClusterDTO
description: Ingest class for a cluster of cells derived algorithmically from single
  cell expression
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SubmittedObjectDTO
slots:
- cell_count
- symbol
- title
attributes:
  cell_type_curie:
    name: cell_type_curie
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/src/schema/highThroughputExpression.yaml
    domain_of:
    - SingleCellExpressionCellClusterDTO
    range: string

Induced

name: SingleCellExpressionCellClusterDTO
description: Ingest class for a cluster of cells derived algorithmically from single
  cell expression
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SubmittedObjectDTO
attributes:
  cell_type_curie:
    name: cell_type_curie
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/src/schema/highThroughputExpression.yaml
    alias: cell_type_curie
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - SingleCellExpressionCellClusterDTO
    range: string
  cell_count:
    name: cell_count
    description: The count of cells that are part of an analysis or cell cluster
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: cell_count
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - SingleCellExpressionAnalysis
    - SingleCellExpressionAnalysisDTO
    - SingleCellExpressionCellCluster
    - SingleCellExpressionCellClusterDTO
    range: integer
    multivalued: false
  symbol:
    name: symbol
    description: The free text symbol (human-readable) for an entity or record
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: symbol
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - HTPExpressionDatasetAnnotation
    - HTPExpressionDatasetAnnotationDTO
    - HTPExpressionDatasetSampleAnnotation
    - HTPExpressionDatasetSampleAnnotationDTO
    - SingleCellExpressionAnalysis
    - SingleCellExpressionAnalysisDTO
    - SingleCellExpressionCellCluster
    - SingleCellExpressionCellClusterDTO
    range: string
    multivalued: false
  title:
    name: title
    description: The free text title for an entity or record
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: title
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - Reference
    - SingleCellExpressionAnalysis
    - SingleCellExpressionAnalysisDTO
    - SingleCellExpressionCellCluster
    - SingleCellExpressionCellClusterDTO
    - Resource
    range: string
    multivalued: false
  primary_external_id:
    name: primary_external_id
    description: The primary external (non-Alliance) database identifier/curie for
      the object. Note that this may be an external (non-Alliance member) identifier
      for an object, like a UniProt ID for a protein, and may act as the MOD's/Alliance
      member's primary key for the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: primary_external_id
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - Person
    - SubmittedObject
    - SubmittedObjectDTO
    - Annotation
    - AnnotationDTO
    range: string
  mod_internal_id:
    name: mod_internal_id
    description: The model organism database (MOD) internal identifier for the object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: mod_internal_id
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - SubmittedObject
    - SubmittedObjectDTO
    - Annotation
    - AnnotationDTO
    range: string
  data_provider_dto:
    name: data_provider_dto
    description: Ingest object representing the organization (e.g. MOD) from which
      the data was sourced and a CrossReference to that organisation's site
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: data_provider_dto
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - SubmittedObjectDTO
    - ChromosomeDTO
    - AssemblyComponentDTO
    - AnnotationDTO
    range: DataProviderDTO
    required: true
    multivalued: false
    inlined: true
  note_dtos:
    name: note_dtos
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: note_dtos
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - SubmittedObjectDTO
    - ConstructComponentSlotAnnotationDTO
    - ConstructGenomicEntityAssociationDTO
    - ConstructCassetteAssociationDTO
    - CassetteComponentSlotAnnotationDTO
    - CassetteGenomicEntityAssociationDTO
    - CassetteTransgenicToolAssociationDTO
    - CassetteStrAssociationDTO
    - AnnotationDTO
    - HTPExpressionDatasetSampleAnnotationDTO
    range: NoteDTO
    multivalued: true
    inlined: true
    inlined_as_list: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: SingleCellExpressionCellClusterDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean