Skip to content

SequenceTargetingReagentGeneAssociationDTO

The DTO class for the relationship between a Sequence Targeting Reagent and its targeted genes. The relation_name should be a VocabularyTerm with one of the following values - targets

classDiagram SequenceTargetingReagentAssociationDTO <|-- SequenceTargetingReagentGeneAssociationDTO SequenceTargetingReagentGeneAssociationDTO : created_by_curie SequenceTargetingReagentGeneAssociationDTO : date_created SequenceTargetingReagentGeneAssociationDTO : date_updated SequenceTargetingReagentGeneAssociationDTO : db_date_created SequenceTargetingReagentGeneAssociationDTO : db_date_updated SequenceTargetingReagentGeneAssociationDTO : evidence_curies SequenceTargetingReagentGeneAssociationDTO : gene_identifier SequenceTargetingReagentGeneAssociationDTO : internal SequenceTargetingReagentGeneAssociationDTO : obsolete SequenceTargetingReagentGeneAssociationDTO : relation_name SequenceTargetingReagentGeneAssociationDTO : sequence_targeting_reagent_identifier SequenceTargetingReagentGeneAssociationDTO : updated_by_curie

URI: alliance:SequenceTargetingReagentGeneAssociationDTO

Parent Classes

Slots

Name Description
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_curies Curies of InformationContentEntity objects given as evidence
gene_identifier None
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
relation_name Name of VocabularyTerm representing relation of an Association
sequence_targeting_reagent_identifier None
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:SequenceTargetingReagentGeneAssociationDTO']
native ['alliance:SequenceTargetingReagentGeneAssociationDTO']

LinkML Specification

Direct

name: SequenceTargetingReagentGeneAssociationDTO
description: The DTO class for the relationship between a Sequence Targeting Reagent
  and its targeted genes. The relation_name should be a VocabularyTerm with one of
  the following values - targets
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SequenceTargetingReagentAssociationDTO
slots:
- relation_name
slot_usage:
  relation_name:
    name: relation_name
    domain_of:
    - SequenceTargetingReagentGeneAssociationDTO
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - ConstructComponentSlotAnnotationDTO
    - LocationAssociationDTO
    range: string
attributes:
  gene_identifier:
    name: gene_identifier
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    range: string
    required: true

Induced

name: SequenceTargetingReagentGeneAssociationDTO
description: The DTO class for the relationship between a Sequence Targeting Reagent
  and its targeted genes. The relation_name should be a VocabularyTerm with one of
  the following values - targets
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SequenceTargetingReagentAssociationDTO
slot_usage:
  relation_name:
    name: relation_name
    domain_of:
    - SequenceTargetingReagentGeneAssociationDTO
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - ConstructComponentSlotAnnotationDTO
    - LocationAssociationDTO
    range: string
attributes:
  gene_identifier:
    name: gene_identifier
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    alias: gene_identifier
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - SequenceTargetingReagentGeneAssociationDTO
    - AlleleGeneAssociationDTO
    - GeneOntologyAnnotationDTO
    - GenePhenotypeAnnotationDTO
    - GeneDiseaseAnnotationDTO
    range: string
    required: true
  relation_name:
    name: relation_name
    description: Name of VocabularyTerm representing relation of an Association
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: relation_name
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - SequenceTargetingReagentGeneAssociationDTO
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - ConstructComponentSlotAnnotationDTO
    - LocationAssociationDTO
    range: string
    required: true
  sequence_targeting_reagent_identifier:
    name: sequence_targeting_reagent_identifier
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    alias: sequence_targeting_reagent_identifier
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - SequenceTargetingReagentAssociationDTO
    range: string
    required: true
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence_curies
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: SequenceTargetingReagentGeneAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean