ResourceDescriptor

None

classDiagram AuditedObject <|-- ResourceDescriptor ResourceDescriptor : created_by ResourceDescriptor : date_created ResourceDescriptor : date_updated ResourceDescriptor : db_date_created ResourceDescriptor : db_date_updated ResourceDescriptor : default_url_template ResourceDescriptor : id_example ResourceDescriptor : id_pattern ResourceDescriptor : internal ResourceDescriptor : name ResourceDescriptor : obsolete ResourceDescriptor : prefix ResourceDescriptor : resource_pages ResourceDescriptor : synonyms ResourceDescriptor : updated_by

URI: alliance:ResourceDescriptor

Parent Classes

AuditedObject
- ResourceDescriptor

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
default_url_template	Default URL template for the resource
id_example	Example ID for the resource that fits the pattern described by the id_pattern slot
id_pattern	Regex for the expected format of the ID
internal	Classifies the entity as private (for internal use) or not (for public use).
name	a human-readable name for an entity
obsolete	Entity is no longer current.
prefix	Denormalization to help with classifying types of crossReferences, distinguishing DOIs from PMC ids, etc.
resource_pages	Pages for a particular resource
synonyms	A generic free-text field for objects that only have string representation of one or more synonyms and do not require meta data or attribution; if meta data or attribution are required to be captured for individual synonyms, consider the NameSlotAnnotation class
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:ResourceDescriptor']
native	['alliance:ResourceDescriptor']

LinkML Specification

Direct

name: ResourceDescriptor
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- prefix
- name
- synonyms
- id_pattern
- id_example
- default_url_template
- resource_pages

Induced

name: ResourceDescriptor
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
attributes:
  prefix:
    name: prefix
    description: Denormalization to help with classifying types of crossReferences,
      distinguishing DOIs from PMC ids, etc.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: prefix
    owner: ResourceDescriptor
    domain_of:
    - CrossReferenceDTO
    - ExternalDatabaseLink
    - ResourceDescriptor
    range: string
    required: true
  name:
    name: name
    description: a human-readable name for an entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: name
    owner: ResourceDescriptor
    domain_of:
    - SequenceTargetingReagent
    - SequenceTargetingReagentDTO
    - Antibody
    - AntibodyDTO
    - Transcript
    - TranscriptDTO
    - Exon
    - ExonDTO
    - CodingSequence
    - CodingSequenceDTO
    - Chromosome
    - ChromosomeDTO
    - AssemblyComponent
    - AssemblyComponentDTO
    - Protein
    - ProteinDTO
    - AffectedGenomicModel
    - AffectedGenomicModelDTO
    - ResourceDescriptor
    - ResourceDescriptorPage
    - VocabularyTerm
    - Vocabulary
    - VocabularyTermSet
    - OntologyTerm
    - HTPExpressionDatasetAnnotation
    - HTPExpressionDatasetAnnotationDTO
    - CurationReportGroup
    - CurationReport
    - BulkLoadGroup
    - BulkLoad
    range: string
  synonyms:
    name: synonyms
    description: A generic free-text field for objects that only have string representation
      of one or more synonyms and do not require meta data or attribution; if meta
      data or attribution are required to be captured for individual synonyms, consider
      the NameSlotAnnotation class
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: synonyms
    owner: ResourceDescriptor
    domain_of:
    - SequenceTargetingReagent
    - SequenceTargetingReagentDTO
    - ResourceDescriptor
    - VocabularyTerm
    - OntologyTerm
    - Resource
    - GeneNomenclatureSet
    range: string
    required: false
  id_pattern:
    name: id_pattern
    description: Regex for the expected format of the ID
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ResourceDescriptor
    alias: id_pattern
    owner: ResourceDescriptor
    domain_of:
    - ResourceDescriptor
    range: string
  id_example:
    name: id_example
    description: Example ID for the resource that fits the pattern described by the
      id_pattern slot
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ResourceDescriptor
    alias: id_example
    owner: ResourceDescriptor
    domain_of:
    - ResourceDescriptor
    range: string
  default_url_template:
    name: default_url_template
    description: Default URL template for the resource
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ResourceDescriptor
    alias: default_url_template
    owner: ResourceDescriptor
    domain_of:
    - ResourceDescriptor
    range: string
  resource_pages:
    name: resource_pages
    description: Pages for a particular resource
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ResourceDescriptor
    multivalued: true
    alias: resource_pages
    owner: ResourceDescriptor
    domain_of:
    - ResourceDescriptor
    range: ResourceDescriptorPage
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ResourceDescriptor
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean