Skip to content

PhenotypeQualifierDTO

Ingest class for a phenotype qualifier.

classDiagram AuditedObjectDTO <|-- PhenotypeQualifierDTO PhenotypeQualifierDTO : created_by_curie PhenotypeQualifierDTO : date_created PhenotypeQualifierDTO : date_updated PhenotypeQualifierDTO : db_date_created PhenotypeQualifierDTO : db_date_updated PhenotypeQualifierDTO : internal PhenotypeQualifierDTO : obsolete PhenotypeQualifierDTO : qualifier_tag_name PhenotypeQualifierDTO : qualifier_term_curie PhenotypeQualifierDTO : related_entity_dto PhenotypeQualifierDTO : updated_by_curie

URI: alliance:PhenotypeQualifierDTO

Parent Classes

Slots

Name Description
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
qualifier_tag_name None
qualifier_term_curie None
related_entity_dto None
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:PhenotypeQualifierDTO']
native ['alliance:PhenotypeQualifierDTO']

LinkML Specification

Direct

name: PhenotypeQualifierDTO
description: Ingest class for a phenotype qualifier.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
attributes:
  qualifier_term_curie:
    name: qualifier_term_curie
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/phenotypeAndDiseaseAnnotation.yaml
    domain_of:
    - PhenotypeQualifierDTO
    range: string
  qualifier_tag_name:
    name: qualifier_tag_name
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/phenotypeAndDiseaseAnnotation.yaml
    domain_of:
    - PhenotypeQualifierDTO
    range: string
  related_entity_dto:
    name: related_entity_dto
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/phenotypeAndDiseaseAnnotation.yaml
    domain_of:
    - PhenotypeQualifierDTO
    range: AffectedEntityDTO
    inlined: true
rules:
- postconditions:
    any_of:
    - slot_conditions:
        qualifier_term_curie:
          name: qualifier_term_curie
          required: true
    - slot_conditions:
        qualifier_tag_name:
          name: qualifier_tag_name
          required: true

Induced

name: PhenotypeQualifierDTO
description: Ingest class for a phenotype qualifier.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
attributes:
  qualifier_term_curie:
    name: qualifier_term_curie
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/phenotypeAndDiseaseAnnotation.yaml
    alias: qualifier_term_curie
    owner: PhenotypeQualifierDTO
    domain_of:
    - PhenotypeQualifierDTO
    range: string
  qualifier_tag_name:
    name: qualifier_tag_name
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/phenotypeAndDiseaseAnnotation.yaml
    alias: qualifier_tag_name
    owner: PhenotypeQualifierDTO
    domain_of:
    - PhenotypeQualifierDTO
    range: string
  related_entity_dto:
    name: related_entity_dto
    from_schema: https://github.com/alliance-genome/agr_persistent_schema/phenotypeAndDiseaseAnnotation.yaml
    alias: related_entity_dto
    owner: PhenotypeQualifierDTO
    domain_of:
    - PhenotypeQualifierDTO
    range: AffectedEntityDTO
    inlined: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: PhenotypeQualifierDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
rules:
- postconditions:
    any_of:
    - slot_conditions:
        qualifier_term_curie:
          name: qualifier_term_curie
          required: true
    - slot_conditions:
        qualifier_tag_name:
          name: qualifier_tag_name
          required: true