OntologyTermClosure

None

classDiagram EvidenceAssociation <|-- OntologyTermClosure OntologyTermClosure : created_by OntologyTermClosure : date_created OntologyTermClosure : date_updated OntologyTermClosure : db_date_created OntologyTermClosure : db_date_updated OntologyTermClosure : distance_between OntologyTermClosure : evidence OntologyTermClosure : internal OntologyTermClosure : obsolete OntologyTermClosure : ontology_term_closure_object OntologyTermClosure : ontology_term_closure_subject OntologyTermClosure : relation OntologyTermClosure : relationship_type OntologyTermClosure : updated_by

URI: alliance:OntologyTermClosure

Parent Classes

AuditedObject
- Association
  - EvidenceAssociation
    - OntologyTermClosure

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
distance_between	distance_between is zero for reflexive–transitive closure each node has an ancestor or descendant of itself
evidence	The evidence that supports some assertion.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
ontology_term_closure_object	None
ontology_term_closure_subject	None
relation	A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
relationship_type	None
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:OntologyTermClosure']
native	['alliance:OntologyTermClosure']

LinkML Specification

Direct

name: OntologyTermClosure
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociation
attributes:
  ontology_term_closure_subject:
    name: ontology_term_closure_subject
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    range: OntologyTerm
    required: true
  ontology_term_closure_object:
    name: ontology_term_closure_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    range: OntologyTerm
    required: true
  distance_between:
    name: distance_between
    description: distance_between is zero for reflexive–transitive closure each node
      has an ancestor or descendant of itself
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    range: integer
  relationship_type:
    name: relationship_type
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    multivalued: true
    range: string

Induced

name: OntologyTermClosure
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociation
attributes:
  ontology_term_closure_subject:
    name: ontology_term_closure_subject
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    alias: ontology_term_closure_subject
    owner: OntologyTermClosure
    domain_of:
    - OntologyTermClosure
    range: OntologyTerm
    required: true
  ontology_term_closure_object:
    name: ontology_term_closure_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    alias: ontology_term_closure_object
    owner: OntologyTermClosure
    domain_of:
    - OntologyTermClosure
    range: OntologyTerm
    required: true
  distance_between:
    name: distance_between
    description: distance_between is zero for reflexive–transitive closure each node
      has an ancestor or descendant of itself
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    alias: distance_between
    owner: OntologyTermClosure
    domain_of:
    - OntologyTermClosure
    range: integer
  relationship_type:
    name: relationship_type
    from_schema: https://github.com/alliance-genome/agr_curation_schema/ontologyTerm.yaml
    multivalued: true
    alias: relationship_type
    owner: OntologyTermClosure
    domain_of:
    - OntologyTermClosure
    range: string
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence
    owner: OntologyTermClosure
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: association_slot
    alias: relation
    owner: OntologyTermClosure
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: string
    required: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: OntologyTermClosure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean