Note

Note object for capturing free-text describing some attribute of an entity, coupled with a 'note type', internal boolean, and an optional list of references. Permissible values for note_type can be viewed and managed in the A-Team curation UI Controlled Vocabulary Terms Table.

classDiagram AuditedObject <|-- Note Note : created_by Note : date_created Note : date_updated Note : db_date_created Note : db_date_updated Note : evidence Note : free_text Note : internal Note : note_type Note : obsolete Note : updated_by

URI: alliance:Note

Parent Classes

AuditedObject
- Note

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence	The evidence that supports some assertion.
free_text	A free text string that describes some aspect of an entity.
internal	Classifies the entity as private (for internal use) or not (for public use).
note_type	The type of note: e.g., cytology, comment, summary.
obsolete	Entity is no longer current.
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:Note']
native	['alliance:Note']

LinkML Specification

Direct

name: Note
description: Note object for capturing free-text describing some attribute of an entity,
  coupled with a 'note type', internal boolean, and an optional list of references.
  Permissible values for note_type can be viewed and managed in the A-Team curation
  UI Controlled Vocabulary Terms Table.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- free_text
- note_type
- evidence
slot_usage:
  free_text:
    name: free_text
    domain_of:
    - Note
    - NoteDTO
    required: true
  note_type:
    name: note_type
    examples:
    - value: disease_summary
    - value: disease_note
    - value: automated_gene_description
    - value: MOD_provided_gene_description
    - value: gene_disease_summary
    - value: gene_function_summary
    - value: gene_phenotype_summary
    - value: transgene_construction_summary
    domain_of:
    - Note
    required: true

Induced

name: Note
description: Note object for capturing free-text describing some attribute of an entity,
  coupled with a 'note type', internal boolean, and an optional list of references.
  Permissible values for note_type can be viewed and managed in the A-Team curation
  UI Controlled Vocabulary Terms Table.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slot_usage:
  free_text:
    name: free_text
    domain_of:
    - Note
    - NoteDTO
    required: true
  note_type:
    name: note_type
    examples:
    - value: disease_summary
    - value: disease_note
    - value: automated_gene_description
    - value: MOD_provided_gene_description
    - value: gene_disease_summary
    - value: gene_function_summary
    - value: gene_phenotype_summary
    - value: transgene_construction_summary
    domain_of:
    - Note
    required: true
attributes:
  free_text:
    name: free_text
    description: A free text string that describes some aspect of an entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: free_text
    owner: Note
    domain_of:
    - Note
    - NoteDTO
    range: string
    required: true
  note_type:
    name: note_type
    description: 'The type of note: e.g., cytology, comment, summary.'
    examples:
    - value: disease_summary
    - value: disease_note
    - value: automated_gene_description
    - value: MOD_provided_gene_description
    - value: gene_disease_summary
    - value: gene_function_summary
    - value: gene_phenotype_summary
    - value: transgene_construction_summary
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: note_type
    owner: Note
    domain_of:
    - Note
    range: VocabularyTerm
    required: true
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence
    owner: Note
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: Note
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: Note
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: Note
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: Note
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: Note
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: Note
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: Note
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: Note
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean