ModCorpusAssociation

For a given reference and Mod, whether it is inside corpus, outside corpus, or needs review, as well as where this sorting came from.

classDiagram CurieObject <|-- ModCorpusAssociation ModCorpusAssociation : alliance_member_id ModCorpusAssociation : corpus ModCorpusAssociation : created_by ModCorpusAssociation : curie ModCorpusAssociation : date_created ModCorpusAssociation : date_updated ModCorpusAssociation : db_date_created ModCorpusAssociation : db_date_updated ModCorpusAssociation : internal ModCorpusAssociation : mod_corpus_association_id ModCorpusAssociation : mod_corpus_sort_source ModCorpusAssociation : obsolete ModCorpusAssociation : reference_id ModCorpusAssociation : updated_by

URI: alliance:ModCorpusAssociation

Parent Classes

AuditedObject
- CurieObject
  - ModCorpusAssociation

Slots

Name	Description
alliance_member_id	An integer referring to an AllianceMember object in the AllianceMember/MOD database table. It's a primary key in the AllianceMember/MOD table, a foreign key if used in other tables.
corpus	in-out-review corpus status of the publication at the mod. null means needs_review, false means outside_corpus, true means inside_corpus.
created_by	The individual that created the entity.
curie	A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal	Classifies the entity as private (for internal use) or not (for public use).
mod_corpus_association_id	An integer referring to a ModCorpusAssociation object. A primary key in the mod_corpus_association table, a foreign key if used in other tables.
mod_corpus_sort_source	origin of corpus determination for that publication and mod
obsolete	Entity is no longer current.
reference_id	An integer referring to a Reference object in the references table. It's a primary key in the references table, a foreign key when in other tables.
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:ModCorpusAssociation']
native	['alliance:ModCorpusAssociation']

LinkML Specification

Direct

name: ModCorpusAssociation
description: For a given reference and Mod, whether it is inside corpus, outside corpus,
  or needs review, as well as where this sorting came from.
notes:
- There should be only one corpus call for any given reference-mod pair.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: CurieObject
slots:
- corpus
- mod_corpus_association_id
- mod_corpus_sort_source
- alliance_member_id
- reference_id
slot_usage:
  alliance_member_id:
    name: alliance_member_id
    notes:
    - An integer corresponding to a primary key in the AllianceMember/MOD table. Used
      here as a foreign key.
    domain_of:
    - AllianceMember
    - ModCorpusAssociation
  reference_id:
    name: reference_id
    notes:
    - An integer corresponding to a primary key in the reference table. Used here
      as a foreign key.
    domain_of:
    - Reference
    - MeshDetail
    - ModCorpusAssociation
  date_created:
    name: date_created
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    required: true
defining_slots:
- reference_id
- alliance_member_id

Induced

name: ModCorpusAssociation
description: For a given reference and Mod, whether it is inside corpus, outside corpus,
  or needs review, as well as where this sorting came from.
notes:
- There should be only one corpus call for any given reference-mod pair.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: CurieObject
slot_usage:
  alliance_member_id:
    name: alliance_member_id
    notes:
    - An integer corresponding to a primary key in the AllianceMember/MOD table. Used
      here as a foreign key.
    domain_of:
    - AllianceMember
    - ModCorpusAssociation
  reference_id:
    name: reference_id
    notes:
    - An integer corresponding to a primary key in the reference table. Used here
      as a foreign key.
    domain_of:
    - Reference
    - MeshDetail
    - ModCorpusAssociation
  date_created:
    name: date_created
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    required: true
attributes:
  corpus:
    name: corpus
    description: in-out-review corpus status of the publication at the mod. null means
      needs_review, false means outside_corpus,  true means inside_corpus.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ModCorpusAssociation
    multivalued: false
    alias: corpus
    owner: ModCorpusAssociation
    domain_of:
    - ModCorpusAssociation
    range: boolean
    required: false
  mod_corpus_association_id:
    name: mod_corpus_association_id
    description: An integer referring to a ModCorpusAssociation object. A primary
      key in the mod_corpus_association table, a foreign key if used in other tables.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ModCorpusAssociation
    multivalued: false
    alias: mod_corpus_association_id
    owner: ModCorpusAssociation
    domain_of:
    - ModCorpusAssociation
    range: integer
    required: true
  mod_corpus_sort_source:
    name: mod_corpus_sort_source
    description: origin of corpus determination for that publication and mod
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ModCorpusAssociation
    multivalued: false
    alias: mod_corpus_sort_source
    owner: ModCorpusAssociation
    domain_of:
    - ModCorpusAssociation
    range: mod_corpus_sort_source_enum
    required: true
  alliance_member_id:
    name: alliance_member_id
    description: An integer referring to an AllianceMember object in the AllianceMember/MOD
      database table. It's a primary key in the AllianceMember/MOD table, a foreign
      key if used in other tables.
    notes:
    - An integer corresponding to a primary key in the AllianceMember/MOD table. Used
      here as a foreign key.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AllianceMember
    multivalued: false
    alias: alliance_member_id
    owner: ModCorpusAssociation
    domain_of:
    - AllianceMember
    - ModCorpusAssociation
    range: integer
    required: true
  reference_id:
    name: reference_id
    description: An integer referring to a Reference object in the references table.
      It's a primary key in the references table, a foreign key when in other tables.
    notes:
    - An integer corresponding to a primary key in the reference table. Used here
      as a foreign key.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: table_key
    multivalued: false
    alias: reference_id
    owner: ModCorpusAssociation
    domain_of:
    - Reference
    - MeshDetail
    - ModCorpusAssociation
    range: integer
    required: true
  curie:
    name: curie
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://github.com/alliance-genome/agr_curation_schema/core.yaml
    multivalued: false
    alias: curie
    owner: ModCorpusAssociation
    domain_of:
    - CurieObject
    - Identifier
    - OntologyTerm
    - Laboratory
    - Annotation
    - ExternalDataBaseEntityDTO
    - GeneNomenclatureSet
    range: uriorcurie
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: date_created
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
    required: true
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ModCorpusAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
defining_slots:
- reference_id
- alliance_member_id