MeshDetail

Medical Subject Headings information coming from PubMed.

classDiagram AuditedObject <|-- MeshDetail MeshDetail : created_by MeshDetail : date_created MeshDetail : date_updated MeshDetail : db_date_created MeshDetail : db_date_updated MeshDetail : heading_term MeshDetail : internal MeshDetail : mesh_detail_id MeshDetail : obsolete MeshDetail : qualifier_term MeshDetail : reference_id MeshDetail : updated_by

URI: alliance:MeshDetail

Parent Classes

AuditedObject
- MeshDetail

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
heading_term	The MeSH term description or definition from PubMed. e.g. Measles in a Measles/epidemiology term.
internal	Classifies the entity as private (for internal use) or not (for public use).
mesh_detail_id	The primary key for a MeshDetail object.
obsolete	Entity is no longer current.
qualifier_term	The MeSH term subheading from PubMed, to narrow down the topic. e.g. epidemiology in a Measles/epidemiology term.
reference_id	Here, a foreign key referring to the references table.
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:MeshDetail']
native	['alliance:MeshDetail']

LinkML Specification

Direct

name: MeshDetail
description: Medical Subject Headings information coming from PubMed.
notes:
- In the literature database, the table is named mesh_details. In the literature API,
  the field is named mesh_terms.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- mesh_details
- mesh_terms
is_a: AuditedObject
slots:
- mesh_detail_id
- reference_id
- heading_term
- qualifier_term
slot_usage:
  reference_id:
    name: reference_id
    description: Here, a foreign key referring to the references table.
    domain_of:
    - Reference
    - MeshDetail
    - ModCorpusAssociation

Induced

name: MeshDetail
description: Medical Subject Headings information coming from PubMed.
notes:
- In the literature database, the table is named mesh_details. In the literature API,
  the field is named mesh_terms.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- mesh_details
- mesh_terms
is_a: AuditedObject
slot_usage:
  reference_id:
    name: reference_id
    description: Here, a foreign key referring to the references table.
    domain_of:
    - Reference
    - MeshDetail
    - ModCorpusAssociation
attributes:
  mesh_detail_id:
    name: mesh_detail_id
    description: The primary key for a MeshDetail object.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: MeshDetail
    alias: mesh_detail_id
    owner: MeshDetail
    domain_of:
    - MeshDetail
    range: integer
    required: true
  reference_id:
    name: reference_id
    description: Here, a foreign key referring to the references table.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: table_key
    multivalued: false
    alias: reference_id
    owner: MeshDetail
    domain_of:
    - Reference
    - MeshDetail
    - ModCorpusAssociation
    range: integer
    required: true
  heading_term:
    name: heading_term
    description: The MeSH term description or definition from PubMed. e.g. Measles
      in a Measles/epidemiology term.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: MeshDetail
    multivalued: false
    alias: heading_term
    owner: MeshDetail
    domain_of:
    - MeshDetail
    range: string
    required: true
  qualifier_term:
    name: qualifier_term
    description: The MeSH term subheading from PubMed, to narrow down the topic. e.g.
      epidemiology in a Measles/epidemiology term.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: MeshDetail
    multivalued: false
    alias: qualifier_term
    owner: MeshDetail
    domain_of:
    - MeshDetail
    range: string
    required: false
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: MeshDetail
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: MeshDetail
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: MeshDetail
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: MeshDetail
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: MeshDetail
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: MeshDetail
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: MeshDetail
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: MeshDetail
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean