LocationAssociation

The mapping of a entity relative to another entity.

classDiagram EvidenceAssociation <|-- LocationAssociation LocationAssociation : created_by LocationAssociation : date_created LocationAssociation : date_updated LocationAssociation : db_date_created LocationAssociation : db_date_updated LocationAssociation : end LocationAssociation : evidence LocationAssociation : internal LocationAssociation : obsolete LocationAssociation : relation LocationAssociation : start LocationAssociation : updated_by

URI: alliance:LocationAssociation

Parent Classes

AuditedObject
- Association
  - EvidenceAssociation
    - LocationAssociation

Children

AuditedObject
- Association
  - EvidenceAssociation
    - LocationAssociation

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
end	The end of the feature in positive 1-based integer coordinates relative to the reference landmark.
evidence	The evidence that supports some assertion.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
relation	A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
start	The start of the feature in positive 1-based integer coordinates relative to the reference landmark.
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:LocationAssociation']
native	['alliance:LocationAssociation']

LinkML Specification

Direct

name: LocationAssociation
description: The mapping of a entity relative to another entity.
notes:
- Leaving start and end optional to allow for fuzzy location.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociation
abstract: true
slots:
- start
- end
slot_usage:
  relation:
    name: relation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    required: true
    any_of:
    - equals_string: has_location
  evidence:
    name: evidence
    notes:
    - List all references that support a given location association.
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation

Induced

name: LocationAssociation
description: The mapping of a entity relative to another entity.
notes:
- Leaving start and end optional to allow for fuzzy location.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociation
abstract: true
slot_usage:
  relation:
    name: relation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    required: true
    any_of:
    - equals_string: has_location
  evidence:
    name: evidence
    notes:
    - List all references that support a given location association.
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
attributes:
  start:
    name: start
    description: The start of the feature in positive 1-based integer coordinates
      relative to the reference landmark.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: LocationAssociation
    alias: start
    owner: LocationAssociation
    domain_of:
    - LocationAssociation
    - LocationAssociationDTO
    range: integer
  end:
    name: end
    description: The end of the feature in positive 1-based integer coordinates relative
      to the reference landmark.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: LocationAssociation
    alias: end
    owner: LocationAssociation
    domain_of:
    - LocationAssociation
    - LocationAssociationDTO
    range: integer
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    notes:
    - List all references that support a given location association.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence
    owner: LocationAssociation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: association_slot
    alias: relation
    owner: LocationAssociation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: string
    required: true
    any_of:
    - equals_string: has_location
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: LocationAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean