Ingest
None
classDiagram
class Ingest
Ingest : agm_ingest_set
Ingest : allele_cell_line_association_ingest_set
Ingest : allele_construct_association_ingest_set
Ingest : allele_gene_association_ingest_set
Ingest : allele_generation_method_association_ingest_set
Ingest : allele_image_association_ingest_set
Ingest : allele_ingest_set
Ingest : allele_origin_association_ingest_set
Ingest : allele_protein_association_ingest_set
Ingest : allele_transcript_association_ingest_set
Ingest : allele_variant_association_ingest_set
Ingest : alliance_member_release_version
Ingest : antibody_ingest_set
Ingest : assembly_component_ingest_set
Ingest : chromosome_ingest_set
Ingest : construct_genomic_entity_association_ingest_set
Ingest : construct_ingest_set
Ingest : disease_agm_ingest_set
Ingest : disease_allele_ingest_set
Ingest : disease_gene_ingest_set
Ingest : gene_genetic_interaction_ingest_set
Ingest : gene_ingest_set
Ingest : gene_molecular_interaction_ingest_set
Ingest : genome_assembly_ingest_set
Ingest : high_throughput_expression_dataset_annotation_ingest_set
Ingest : high_throughput_expression_dataset_sample_annotation_ingest_set
Ingest : linkml_version
Ingest : ontology_closure_ingest_set
Ingest : phenotype_agm_ingest_set
Ingest : phenotype_allele_ingest_set
Ingest : phenotype_gene_ingest_set
Ingest : protein_ingest_set
Ingest : source_variant_genomic_location_association_ingest_set
Ingest : source_variant_protein_location_association_ingest_set
Ingest : source_variant_transcript_location_association_ingest_set
Ingest : sqtr_gene_association_ingest_set
Ingest : sqtr_ingest_set
Ingest : transcript_ingest_set
Ingest : variant_genomic_location_association_ingest_set
Ingest : variant_ingest_set
Ingest : variant_protein_location_association_ingest_set
Ingest : variant_transcript_location_association_ingest_set
URI: [alliance:Ingest](http://alliancegenome.org/Ingest)
## Parent Classes
<!-- no inheritance hierarchy -->
## Slots
| Name | Description |
| --- | --- |
| [agm_ingest_set](agm_ingest_set.md) | None |
| [allele_cell_line_association_ingest_set](allele_cell_line_association_ingest_set.md) | None |
| [allele_construct_association_ingest_set](allele_construct_association_ingest_set.md) | None |
| [allele_gene_association_ingest_set](allele_gene_association_ingest_set.md) | None |
| [allele_generation_method_association_ingest_set](allele_generation_method_association_ingest_set.md) | None |
| [allele_image_association_ingest_set](allele_image_association_ingest_set.md) | None |
| [allele_ingest_set](allele_ingest_set.md) | None |
| [allele_origin_association_ingest_set](allele_origin_association_ingest_set.md) | None |
| [allele_protein_association_ingest_set](allele_protein_association_ingest_set.md) | None |
| [allele_transcript_association_ingest_set](allele_transcript_association_ingest_set.md) | None |
| [allele_variant_association_ingest_set](allele_variant_association_ingest_set.md) | None |
| [alliance_member_release_version](alliance_member_release_version.md) | Version of Alliance member/MOD release used for submitted file |
| [antibody_ingest_set](antibody_ingest_set.md) | An ingest set for Antibody objects |
| [assembly_component_ingest_set](assembly_component_ingest_set.md) | None |
| [chromosome_ingest_set](chromosome_ingest_set.md) | None |
| [construct_genomic_entity_association_ingest_set](construct_genomic_entity_association_ingest_set.md) | An ingest set for ConstructGenomicEntityAssociationDTO |
| [construct_ingest_set](construct_ingest_set.md) | An ingest set for Constructs |
| [disease_agm_ingest_set](disease_agm_ingest_set.md) | None |
| [disease_allele_ingest_set](disease_allele_ingest_set.md) | None |
| [disease_gene_ingest_set](disease_gene_ingest_set.md) | None |
| [gene_genetic_interaction_ingest_set](gene_genetic_interaction_ingest_set.md) | None |
| [gene_ingest_set](gene_ingest_set.md) | None |
| [gene_molecular_interaction_ingest_set](gene_molecular_interaction_ingest_set.md) | None |
| [genome_assembly_ingest_set](genome_assembly_ingest_set.md) | None |
| [high_throughput_expression_dataset_annotation_ingest_set](high_throughput_expression_dataset_annotation_ingest_set.md) | None |
| [high_throughput_expression_dataset_sample_annotation_ingest_set](high_throughput_expression_dataset_sample_annotation_ingest_set.md) | None |
| [linkml_version](linkml_version.md) | Version of LinkML schema used for submitted file in the format n.n.n (e.g. 1.2.4 or 2.0.0) |
| [ontology_closure_ingest_set](ontology_closure_ingest_set.md) | None |
| [phenotype_agm_ingest_set](phenotype_agm_ingest_set.md) | None |
| [phenotype_allele_ingest_set](phenotype_allele_ingest_set.md) | None |
| [phenotype_gene_ingest_set](phenotype_gene_ingest_set.md) | None |
| [protein_ingest_set](protein_ingest_set.md) | None |
| [source_variant_genomic_location_association_ingest_set](source_variant_genomic_location_association_ingest_set.md) | None |
| [source_variant_protein_location_association_ingest_set](source_variant_protein_location_association_ingest_set.md) | None |
| [source_variant_transcript_location_association_ingest_set](source_variant_transcript_location_association_ingest_set.md) | None |
| [sqtr_gene_association_ingest_set](sqtr_gene_association_ingest_set.md) | None |
| [sqtr_ingest_set](sqtr_ingest_set.md) | None |
| [transcript_ingest_set](transcript_ingest_set.md) | None |
| [variant_genomic_location_association_ingest_set](variant_genomic_location_association_ingest_set.md) | None |
| [variant_ingest_set](variant_ingest_set.md) | None |
| [variant_protein_location_association_ingest_set](variant_protein_location_association_ingest_set.md) | None |
| [variant_transcript_location_association_ingest_set](variant_transcript_location_association_ingest_set.md) | None |
## Mappings
| Mapping Type | Mapped Value |
| --- | --- |
| self | ['alliance:Ingest'] |
| native | ['alliance:Ingest'] |
## LinkML Specification
<!-- TODO: investigate https://stackoverflow.com/questions/37606292/how-to-create-tabbed-code-blocks-in-mkdocs-or-sphinx -->
### Direct
<details>
```yaml
name: Ingest
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
slots:
- linkml_version
- alliance_member_release_version
- allele_ingest_set
- antibody_ingest_set
- construct_ingest_set
- construct_genomic_entity_association_ingest_set
- disease_allele_ingest_set
- disease_agm_ingest_set
- disease_gene_ingest_set
- phenotype_allele_ingest_set
- phenotype_agm_ingest_set
- phenotype_gene_ingest_set
- gene_ingest_set
- variant_ingest_set
- allele_variant_association_ingest_set
- allele_gene_association_ingest_set
- allele_transcript_association_ingest_set
- allele_protein_association_ingest_set
- allele_construct_association_ingest_set
- allele_cell_line_association_ingest_set
- allele_origin_association_ingest_set
- allele_image_association_ingest_set
- allele_generation_method_association_ingest_set
- gene_genetic_interaction_ingest_set
- gene_molecular_interaction_ingest_set
- variant_genomic_location_association_ingest_set
- variant_transcript_location_association_ingest_set
- variant_protein_location_association_ingest_set
- source_variant_genomic_location_association_ingest_set
- source_variant_transcript_location_association_ingest_set
- source_variant_protein_location_association_ingest_set
- agm_ingest_set
- sqtr_ingest_set
- sqtr_gene_association_ingest_set
- ontology_closure_ingest_set
- transcript_ingest_set
- protein_ingest_set
- chromosome_ingest_set
- genome_assembly_ingest_set
- assembly_component_ingest_set
- high_throughput_expression_dataset_annotation_ingest_set
- high_throughput_expression_dataset_sample_annotation_ingest_set
tree_root: true
Induced
name: Ingest
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
attributes:
linkml_version:
name: linkml_version
description: Version of LinkML schema used for submitted file in the format n.n.n
(e.g. 1.2.4 or 2.0.0)
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
domain: Ingest
alias: linkml_version
owner: Ingest
domain_of:
- Ingest
range: string
required: true
alliance_member_release_version:
name: alliance_member_release_version
description: Version of Alliance member/MOD release used for submitted file
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
domain: Ingest
alias: alliance_member_release_version
owner: Ingest
domain_of:
- Ingest
- BulkLoadFile
range: string
allele_ingest_set:
name: allele_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleDTO
inlined_as_list: true
antibody_ingest_set:
name: antibody_ingest_set
description: An ingest set for Antibody objects
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: antibody_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AntibodyDTO
inlined_as_list: true
construct_ingest_set:
name: construct_ingest_set
description: An ingest set for Constructs
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: construct_ingest_set
owner: Ingest
domain_of:
- Ingest
range: ConstructDTO
inlined_as_list: true
construct_genomic_entity_association_ingest_set:
name: construct_genomic_entity_association_ingest_set
description: An ingest set for ConstructGenomicEntityAssociationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: construct_genomic_entity_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: ConstructGenomicEntityAssociationDTO
inlined_as_list: true
disease_allele_ingest_set:
name: disease_allele_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: disease_allele_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleDiseaseAnnotationDTO
inlined_as_list: true
disease_agm_ingest_set:
name: disease_agm_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: disease_agm_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AGMDiseaseAnnotationDTO
inlined_as_list: true
disease_gene_ingest_set:
name: disease_gene_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: disease_gene_ingest_set
owner: Ingest
domain_of:
- Ingest
range: GeneDiseaseAnnotationDTO
inlined_as_list: true
phenotype_allele_ingest_set:
name: phenotype_allele_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: phenotype_allele_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AllelePhenotypeAnnotationDTO
inlined_as_list: true
phenotype_agm_ingest_set:
name: phenotype_agm_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: phenotype_agm_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AGMPhenotypeAnnotationDTO
inlined_as_list: true
phenotype_gene_ingest_set:
name: phenotype_gene_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: phenotype_gene_ingest_set
owner: Ingest
domain_of:
- Ingest
range: GenePhenotypeAnnotationDTO
inlined_as_list: true
gene_ingest_set:
name: gene_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: gene_ingest_set
owner: Ingest
domain_of:
- Ingest
range: GeneDTO
inlined_as_list: true
variant_ingest_set:
name: variant_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: variant_ingest_set
owner: Ingest
domain_of:
- Ingest
range: VariantDTO
inlined_as_list: true
allele_variant_association_ingest_set:
name: allele_variant_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_variant_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleVariantAssociationDTO
inlined_as_list: true
allele_gene_association_ingest_set:
name: allele_gene_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_gene_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleGeneAssociationDTO
inlined_as_list: true
allele_transcript_association_ingest_set:
name: allele_transcript_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_transcript_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleTranscriptAssociationDTO
inlined_as_list: true
allele_protein_association_ingest_set:
name: allele_protein_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_protein_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleProteinAssociationDTO
inlined_as_list: true
allele_construct_association_ingest_set:
name: allele_construct_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_construct_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleConstructAssociationDTO
inlined_as_list: true
allele_cell_line_association_ingest_set:
name: allele_cell_line_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_cell_line_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleCellLineAssociationDTO
inlined_as_list: true
allele_origin_association_ingest_set:
name: allele_origin_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_origin_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleOriginAssociationDTO
inlined_as_list: true
allele_image_association_ingest_set:
name: allele_image_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_image_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleImageAssociationDTO
inlined_as_list: true
allele_generation_method_association_ingest_set:
name: allele_generation_method_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: allele_generation_method_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AlleleGenerationMethodAssociationDTO
inlined_as_list: true
gene_genetic_interaction_ingest_set:
name: gene_genetic_interaction_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: gene_genetic_interaction_ingest_set
owner: Ingest
domain_of:
- Ingest
range: GeneGeneticInteractionDTO
inlined_as_list: true
gene_molecular_interaction_ingest_set:
name: gene_molecular_interaction_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: gene_molecular_interaction_ingest_set
owner: Ingest
domain_of:
- Ingest
range: GeneMolecularInteractionDTO
inlined_as_list: true
variant_genomic_location_association_ingest_set:
name: variant_genomic_location_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: variant_genomic_location_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: CuratedVariantGenomicLocationAssociationDTO
inlined_as_list: true
variant_transcript_location_association_ingest_set:
name: variant_transcript_location_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: variant_transcript_location_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: CuratedVariantTranscriptLocationAssociationDTO
inlined_as_list: true
variant_protein_location_association_ingest_set:
name: variant_protein_location_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: variant_protein_location_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: CuratedVariantPolypeptideLocationAssociationDTO
inlined_as_list: true
source_variant_genomic_location_association_ingest_set:
name: source_variant_genomic_location_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: source_variant_genomic_location_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: SourceVariantGenomicLocationAssociationDTO
inlined_as_list: true
source_variant_transcript_location_association_ingest_set:
name: source_variant_transcript_location_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: source_variant_transcript_location_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: SourceVariantTranscriptLocationAssociationDTO
inlined_as_list: true
source_variant_protein_location_association_ingest_set:
name: source_variant_protein_location_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: source_variant_protein_location_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: SourceVariantPolypeptideLocationAssociationDTO
inlined_as_list: true
agm_ingest_set:
name: agm_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: agm_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AffectedGenomicModelDTO
inlined_as_list: true
sqtr_ingest_set:
name: sqtr_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: sqtr_ingest_set
owner: Ingest
domain_of:
- Ingest
range: SequenceTargetingReagentDTO
inlined_as_list: true
sqtr_gene_association_ingest_set:
name: sqtr_gene_association_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: sqtr_gene_association_ingest_set
owner: Ingest
domain_of:
- Ingest
range: SequenceTargetingReagentGeneAssociationDTO
inlined_as_list: true
ontology_closure_ingest_set:
name: ontology_closure_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: ontology_closure_ingest_set
owner: Ingest
domain_of:
- Ingest
range: OntologyTermClosure
inlined_as_list: true
transcript_ingest_set:
name: transcript_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: transcript_ingest_set
owner: Ingest
domain_of:
- Ingest
range: TranscriptDTO
inlined_as_list: true
protein_ingest_set:
name: protein_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: protein_ingest_set
owner: Ingest
domain_of:
- Ingest
range: ProteinDTO
inlined_as_list: true
chromosome_ingest_set:
name: chromosome_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: chromosome_ingest_set
owner: Ingest
domain_of:
- Ingest
range: ChromosomeDTO
inlined_as_list: true
genome_assembly_ingest_set:
name: genome_assembly_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: genome_assembly_ingest_set
owner: Ingest
domain_of:
- Ingest
range: GenomeAssemblyDTO
inlined_as_list: true
assembly_component_ingest_set:
name: assembly_component_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: assembly_component_ingest_set
owner: Ingest
domain_of:
- Ingest
range: AssemblyComponentDTO
inlined_as_list: true
high_throughput_expression_dataset_annotation_ingest_set:
name: high_throughput_expression_dataset_annotation_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: high_throughput_expression_dataset_annotation_ingest_set
owner: Ingest
domain_of:
- Ingest
range: HTPExpressionDatasetAnnotationDTO
inlined_as_list: true
high_throughput_expression_dataset_sample_annotation_ingest_set:
name: high_throughput_expression_dataset_sample_annotation_ingest_set
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
mixins:
- object_set
domain: Ingest
multivalued: true
alias: high_throughput_expression_dataset_sample_annotation_ingest_set
owner: Ingest
domain_of:
- Ingest
range: HTPExpressionDatasetSampleAnnotationDTO
inlined_as_list: true
tree_root: true