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GenerationMethodDTO

None

classDiagram AuditedObjectDTO <|-- GenerationMethodDTO GenerationMethodDTO : chemical_mutagen_name GenerationMethodDTO : created_by_curie GenerationMethodDTO : date_created GenerationMethodDTO : date_updated GenerationMethodDTO : db_date_created GenerationMethodDTO : db_date_updated GenerationMethodDTO : integration_method_name GenerationMethodDTO : internal GenerationMethodDTO : irradiation_mutagen_name GenerationMethodDTO : mutagenesis_method_names GenerationMethodDTO : mutagenesis_target GenerationMethodDTO : obsolete GenerationMethodDTO : updated_by_curie

URI: alliance:GenerationMethodDTO

Parent Classes

Slots

Name Description
chemical_mutagen_name The name of the chemical used to generate the mutation through mutagenesis
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
integration_method_name WormBase captures the method by which an extrachromosomal transgene was integrated into the genome.
internal Classifies the entity as private (for internal use) or not (for public use).
irradiation_mutagen_name The name of the irradiation used to generate the mutation through mutagenesis
mutagenesis_method_names Name of the VocabularyTerm describing the mutagenesis method, e.g. spontaneous / naturally occurring / radiation-induced / recombinant / ENU / CRISPR / TALEN / gamma rays / not specified / spontaneous / DNA / DNA AND CRISPR / DNA and TALEN / zinc finger nuclease / EMS
mutagenesis_target The target of the mutation, e.g. strain / adult females / adult males / embryos / sperm / not specified
obsolete Entity is no longer current.
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:GenerationMethodDTO']
native ['alliance:GenerationMethodDTO']

LinkML Specification

Direct

name: GenerationMethodDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
slots:
- mutagenesis_method_names
- mutagenesis_target
- integration_method_name
- chemical_mutagen_name
- irradiation_mutagen_name

Induced

name: GenerationMethodDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
attributes:
  mutagenesis_method_names:
    name: mutagenesis_method_names
    description: Name of the VocabularyTerm describing the mutagenesis method, e.g.
      spontaneous / naturally occurring / radiation-induced / recombinant / ENU /
      CRISPR / TALEN / gamma rays / not specified / spontaneous / DNA / DNA AND CRISPR
      / DNA and TALEN / zinc finger nuclease / EMS
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AlleleGenerationMethodAssociationDTO
    multivalued: true
    alias: mutagenesis_method_names
    owner: GenerationMethodDTO
    domain_of:
    - GenerationMethodDTO
    range: string
  mutagenesis_target:
    name: mutagenesis_target
    description: The target of the mutation, e.g. strain / adult females / adult males
      / embryos / sperm / not specified
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - mutagee
    alias: mutagenesis_target
    owner: GenerationMethodDTO
    domain_of:
    - GenerationMethod
    - GenerationMethodDTO
    range: string
  integration_method_name:
    name: integration_method_name
    description: WormBase captures the method by which an extrachromosomal transgene
      was integrated into the genome.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: GenerationMethodDTO
    multivalued: false
    alias: integration_method_name
    owner: GenerationMethodDTO
    domain_of:
    - GenerationMethodDTO
    range: string
  chemical_mutagen_name:
    name: chemical_mutagen_name
    description: The name of the chemical used to generate the mutation through mutagenesis
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: GenerationMethodDTO
    alias: chemical_mutagen_name
    owner: GenerationMethodDTO
    domain_of:
    - GenerationMethodDTO
    range: string
  irradiation_mutagen_name:
    name: irradiation_mutagen_name
    description: The name of the irradiation used to generate the mutation through
      mutagenesis
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: GenerationMethodDTO
    alias: irradiation_mutagen_name
    owner: GenerationMethodDTO
    domain_of:
    - GenerationMethodDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: GenerationMethodDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean