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GenerationMethod

None

classDiagram AuditedObject <|-- GenerationMethod GenerationMethod : chemical_mutagen GenerationMethod : created_by GenerationMethod : date_created GenerationMethod : date_updated GenerationMethod : db_date_created GenerationMethod : db_date_updated GenerationMethod : integration_method GenerationMethod : internal GenerationMethod : irradiation_mutagen GenerationMethod : mutagenesis_methods GenerationMethod : mutagenesis_target GenerationMethod : obsolete GenerationMethod : updated_by

URI: alliance:GenerationMethod

Parent Classes

Slots

Name Description
chemical_mutagen The chemical used to generate the mutation through mutagenesis
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
integration_method WormBase captures the method by which an extrachromosomal transgene was integrated into the genome.
internal Classifies the entity as private (for internal use) or not (for public use).
irradiation_mutagen The irradiation used to generate the mutation through mutagenesis
mutagenesis_methods Technique used to create the allele, e.g. spontaneous / naturally occurring / radiation-induced / recombinant / ENU / CRISPR / TALEN / gamma rays / not specified / spontaneous / DNA / DNA AND CRISPR / DNA and TALEN / zinc finger nuclease / EMS
mutagenesis_target The target of the mutation, e.g. strain / adult females / adult males / embryos / sperm / not specified
obsolete Entity is no longer current.
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:GenerationMethod']
native ['alliance:GenerationMethod']

LinkML Specification

Direct

name: GenerationMethod
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- mutagenesis_methods
- mutagenesis_target
- integration_method
- chemical_mutagen
- irradiation_mutagen

Induced

name: GenerationMethod
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
attributes:
  mutagenesis_methods:
    name: mutagenesis_methods
    description: Technique used to create the allele, e.g. spontaneous / naturally
      occurring / radiation-induced / recombinant / ENU / CRISPR / TALEN / gamma rays
      / not specified / spontaneous / DNA / DNA AND CRISPR / DNA and TALEN / zinc
      finger nuclease / EMS
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: mutagenesis_methods
    owner: GenerationMethod
    domain_of:
    - GenerationMethod
    range: VocabularyTerm
  mutagenesis_target:
    name: mutagenesis_target
    description: The target of the mutation, e.g. strain / adult females / adult males
      / embryos / sperm / not specified
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - mutagee
    alias: mutagenesis_target
    owner: GenerationMethod
    domain_of:
    - GenerationMethod
    - GenerationMethodDTO
    range: string
  integration_method:
    name: integration_method
    description: WormBase captures the method by which an extrachromosomal transgene
      was integrated into the genome.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: GenerationMethod
    multivalued: false
    alias: integration_method
    owner: GenerationMethod
    domain_of:
    - GenerationMethod
    range: VocabularyTerm
  chemical_mutagen:
    name: chemical_mutagen
    description: The chemical used to generate the mutation through mutagenesis
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: GenerationMethod
    alias: chemical_mutagen
    owner: GenerationMethod
    domain_of:
    - GenerationMethod
    range: VocabularyTerm
  irradiation_mutagen:
    name: irradiation_mutagen
    description: The irradiation used to generate the mutation through mutagenesis
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: GenerationMethod
    alias: irradiation_mutagen
    owner: GenerationMethod
    domain_of:
    - GenerationMethod
    range: VocabularyTerm
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: GenerationMethod
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean