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GeneSecondaryIdSlotAnnotation

None

classDiagram SecondaryIdSlotAnnotation <|-- GeneSecondaryIdSlotAnnotation GeneSecondaryIdSlotAnnotation : created_by GeneSecondaryIdSlotAnnotation : date_created GeneSecondaryIdSlotAnnotation : date_updated GeneSecondaryIdSlotAnnotation : db_date_created GeneSecondaryIdSlotAnnotation : db_date_updated GeneSecondaryIdSlotAnnotation : evidence GeneSecondaryIdSlotAnnotation : internal GeneSecondaryIdSlotAnnotation : obsolete GeneSecondaryIdSlotAnnotation : secondary_id GeneSecondaryIdSlotAnnotation : single_gene GeneSecondaryIdSlotAnnotation : updated_by

URI: alliance:GeneSecondaryIdSlotAnnotation

Parent Classes

Slots

Name Description
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence The evidence that supports some assertion.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
secondary_id None
single_gene None
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:GeneSecondaryIdSlotAnnotation']
native ['alliance:GeneSecondaryIdSlotAnnotation']

LinkML Specification

Direct

name: GeneSecondaryIdSlotAnnotation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SecondaryIdSlotAnnotation
slots:
- single_gene
slot_usage:
  single_gene:
    name: single_gene
    domain_of:
    - GeneSymbolSlotAnnotation
    - GeneFullNameSlotAnnotation
    - GeneSecondaryIdSlotAnnotation
    - GeneSystematicNameSlotAnnotation
    - GeneSynonymSlotAnnotation
    - GeneChangeEventSlotAnnotation
    - GeneOntologyAnnotation
    required: true

Induced

name: GeneSecondaryIdSlotAnnotation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SecondaryIdSlotAnnotation
slot_usage:
  single_gene:
    name: single_gene
    domain_of:
    - GeneSymbolSlotAnnotation
    - GeneFullNameSlotAnnotation
    - GeneSecondaryIdSlotAnnotation
    - GeneSystematicNameSlotAnnotation
    - GeneSynonymSlotAnnotation
    - GeneChangeEventSlotAnnotation
    - GeneOntologyAnnotation
    required: true
attributes:
  single_gene:
    name: single_gene
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: single_gene
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - GeneSymbolSlotAnnotation
    - GeneFullNameSlotAnnotation
    - GeneSecondaryIdSlotAnnotation
    - GeneSystematicNameSlotAnnotation
    - GeneSynonymSlotAnnotation
    - GeneChangeEventSlotAnnotation
    - GeneOntologyAnnotation
    range: Gene
    required: true
  secondary_id:
    name: secondary_id
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: secondary_id
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - SecondaryIdSlotAnnotation
    - SecondaryIdSlotAnnotationDTO
    - AgmSecondaryIdSlotAnnotation
    range: uriorcurie
    required: true
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: GeneSecondaryIdSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean