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GeneOntologyAnnotation

An annotation associating a gene to a Gene Ontology (GO) term

classDiagram AuditedObject <|-- GeneOntologyAnnotation GeneOntologyAnnotation : created_by GeneOntologyAnnotation : date_created GeneOntologyAnnotation : date_updated GeneOntologyAnnotation : db_date_created GeneOntologyAnnotation : db_date_updated GeneOntologyAnnotation : go_term GeneOntologyAnnotation : internal GeneOntologyAnnotation : obsolete GeneOntologyAnnotation : single_gene GeneOntologyAnnotation : updated_by

URI: alliance:GeneOntologyAnnotation

Parent Classes

Slots

Name Description
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
go_term the Gene Ontology (GO) term to which the gene is being annotated
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
single_gene None
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:GeneOntologyAnnotation']
native ['alliance:GeneOntologyAnnotation']

LinkML Specification

Direct

name: GeneOntologyAnnotation
description: An annotation associating a gene to a Gene Ontology (GO) term
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- single_gene
- go_term
slot_usage:
  go_term:
    name: go_term
    domain_of:
    - GeneOntologyAnnotation
    required: true

Induced

name: GeneOntologyAnnotation
description: An annotation associating a gene to a Gene Ontology (GO) term
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slot_usage:
  go_term:
    name: go_term
    domain_of:
    - GeneOntologyAnnotation
    required: true
attributes:
  single_gene:
    name: single_gene
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: single_gene
    owner: GeneOntologyAnnotation
    domain_of:
    - GeneSymbolSlotAnnotation
    - GeneFullNameSlotAnnotation
    - GeneSecondaryIdSlotAnnotation
    - GeneSystematicNameSlotAnnotation
    - GeneSynonymSlotAnnotation
    - GeneChangeEventSlotAnnotation
    - GeneOntologyAnnotation
    range: Gene
  go_term:
    name: go_term
    description: the Gene Ontology (GO) term to which the gene is being annotated
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: go_term
    owner: GeneOntologyAnnotation
    domain_of:
    - GeneOntologyAnnotation
    range: GOTerm
    required: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: GeneOntologyAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean