Figure

An entity representing a figure or table in a publication.

classDiagram CurieObject <|-- Figure Figure : caption Figure : created_by Figure : curie Figure : date_created Figure : date_updated Figure : db_date_created Figure : db_date_updated Figure : internal Figure : label Figure : obsolete Figure : secondary_identifiers Figure : single_reference Figure : updated_by

URI: alliance:Figure

Parent Classes

AuditedObject
- CurieObject
  - Figure

Slots

Name	Description
caption	Text describing the contents of a figure or table in a publication.
created_by	The individual that created the entity.
curie	A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal	Classifies the entity as private (for internal use) or not (for public use).
label	A short display name for the figure. For example: Figure 2, Figure 3B
obsolete	Entity is no longer current.
secondary_identifiers	None
single_reference	holds between an object and a single reference
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:Figure']
native	['alliance:Figure']

LinkML Specification

Direct

name: Figure
description: An entity representing a figure or table in a publication.
notes:
- Ideally, a Figure entity represents an entire figure (or table). However, in some
  cases, a Figure entity may represent only a part of some figure. For example, when
  importing an old cropped image of Figure 2B, it may be simpler to simply create
  a Figure entity representing that 2B part. A Figure will usually have one related
  Image, but it can sometimes have many.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: CurieObject
slots:
- single_reference
- label
- caption
- secondary_identifiers
slot_usage:
  single_reference:
    name: single_reference
    domain_of:
    - SingleReferenceAssociation
    - Figure
    - ConditionRelation
    - SourceVariantGenomicLocationAssociation
    - SourceVariantTranscriptLocationAssociation
    - SourceVariantPolypeptideLocationAssociation
    - GeneToGeneOrthologyCurated
    - ExpressionExperiment
    - FunctionalGeneSet
    required: true

Induced

name: Figure
description: An entity representing a figure or table in a publication.
notes:
- Ideally, a Figure entity represents an entire figure (or table). However, in some
  cases, a Figure entity may represent only a part of some figure. For example, when
  importing an old cropped image of Figure 2B, it may be simpler to simply create
  a Figure entity representing that 2B part. A Figure will usually have one related
  Image, but it can sometimes have many.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: CurieObject
slot_usage:
  single_reference:
    name: single_reference
    domain_of:
    - SingleReferenceAssociation
    - Figure
    - ConditionRelation
    - SourceVariantGenomicLocationAssociation
    - SourceVariantTranscriptLocationAssociation
    - SourceVariantPolypeptideLocationAssociation
    - GeneToGeneOrthologyCurated
    - ExpressionExperiment
    - FunctionalGeneSet
    required: true
attributes:
  single_reference:
    name: single_reference
    description: holds between an object and a single reference
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: single_reference
    owner: Figure
    domain_of:
    - SingleReferenceAssociation
    - Figure
    - ConditionRelation
    - SourceVariantGenomicLocationAssociation
    - SourceVariantTranscriptLocationAssociation
    - SourceVariantPolypeptideLocationAssociation
    - GeneToGeneOrthologyCurated
    - ExpressionExperiment
    - FunctionalGeneSet
    range: Reference
    required: true
  label:
    name: label
    description: 'A short display name for the figure. For example: Figure 2, Figure
      3B'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: label
    owner: Figure
    domain_of:
    - Figure
    - ImagePane
    range: string
  caption:
    name: caption
    description: Text describing the contents of a figure or table in a publication.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: Figure
    alias: caption
    owner: Figure
    domain_of:
    - Figure
    range: string
  secondary_identifiers:
    name: secondary_identifiers
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - secondary_ids
    multivalued: true
    alias: secondary_identifiers
    owner: Figure
    domain_of:
    - SequenceTargetingReagent
    - SequenceTargetingReagentDTO
    - Reagent
    - ReagentDTO
    - OntologyTerm
    - Figure
    - Image
    - ExternalDataBaseEntity
    - ExternalDataBaseEntityDTO
    range: uriorcurie
  curie:
    name: curie
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://github.com/alliance-genome/agr_curation_schema/core.yaml
    multivalued: false
    alias: curie
    owner: Figure
    domain_of:
    - CurieObject
    - Identifier
    - OntologyTerm
    - Laboratory
    - Annotation
    - ExternalDataBaseEntityDTO
    - GeneNomenclatureSet
    range: uriorcurie
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: Figure
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: Figure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: Figure
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: Figure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: Figure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: Figure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: Figure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: Figure
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean