ExternalDatabaseLink

Base relation that holds the identifier prefix, base url and url suffix to help in generating URLs in crossReferences.

classDiagram AuditedObject <|-- ExternalDatabaseLink ExternalDatabaseLink : created_by ExternalDatabaseLink : date_created ExternalDatabaseLink : date_updated ExternalDatabaseLink : db_date_created ExternalDatabaseLink : db_date_updated ExternalDatabaseLink : dbkey ExternalDatabaseLink : internal ExternalDatabaseLink : obsolete ExternalDatabaseLink : prefix ExternalDatabaseLink : prefix_order ExternalDatabaseLink : prefix_page ExternalDatabaseLink : updated_by ExternalDatabaseLink : url_prefix ExternalDatabaseLink : url_suffix

URI: alliance:ExternalDatabaseLink

Parent Classes

AuditedObject
- ExternalDatabaseLink

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
dbkey	Typically the primary key on the table. Should be a global sequence in the database to insure uniqueness over the entire suite of tables. Alternatively, could be a serial8 identifier. Tables with a dbkey should have an alternate key to establish uniqueness based on the data in the table.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
prefix	Denormalization to help with classifying types of crossReferences, distinguishing DOIs from PMC ids, etc.
prefix_order	The relative order of the resource when listed with other crossReferences.
prefix_page	The category of pages the resource in the context of the URL associated with the crossReference provides. Equivalent to the 'page' attribute in the Alliance resourceDescriptor file.
updated_by	The individual that last modified the entity.
url_prefix	The prefix of the url before the accession number.
url_suffix	The suffix of the url after the accession number.

Mappings

Mapping Type	Mapped Value
self	['alliance:ExternalDatabaseLink']
native	['alliance:ExternalDatabaseLink']

LinkML Specification

Direct

name: ExternalDatabaseLink
description: Base relation that holds the identifier prefix, base url and url suffix
  to help in generating URLs in crossReferences.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- dbkey
- prefix
- url_prefix
- url_suffix
- prefix_page
- prefix_order

Induced

name: ExternalDatabaseLink
description: Base relation that holds the identifier prefix, base url and url suffix
  to help in generating URLs in crossReferences.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
attributes:
  dbkey:
    name: dbkey
    description: Typically the primary key on the table.  Should be a global sequence
      in the database to insure uniqueness over the entire suite of tables.  Alternatively,
      could be a serial8 identifier. Tables with a dbkey should have an alternate
      key to establish uniqueness based on the data in the table.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: dbkey
    owner: ExternalDatabaseLink
    domain_of:
    - ExternalDatabaseLink
    - OntologyTerm
    range: string
  prefix:
    name: prefix
    description: Denormalization to help with classifying types of crossReferences,
      distinguishing DOIs from PMC ids, etc.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: prefix
    owner: ExternalDatabaseLink
    domain_of:
    - CrossReferenceDTO
    - ExternalDatabaseLink
    - ResourceDescriptor
    range: string
    required: true
  url_prefix:
    name: url_prefix
    description: The prefix of the url before the accession number.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: url_prefix
    owner: ExternalDatabaseLink
    domain_of:
    - ExternalDatabaseLink
    range: string
  url_suffix:
    name: url_suffix
    description: The suffix of the url after the accession number.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: url_suffix
    owner: ExternalDatabaseLink
    domain_of:
    - ExternalDatabaseLink
    range: string
  prefix_page:
    name: prefix_page
    description: The category of pages the resource in the context of the URL associated
      with the crossReference provides.  Equivalent to the 'page' attribute in the
      Alliance resourceDescriptor file.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: prefix_page
    owner: ExternalDatabaseLink
    domain_of:
    - ExternalDatabaseLink
    range: string
  prefix_order:
    name: prefix_order
    description: The relative order of the resource when listed with other crossReferences.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: prefix_order
    owner: ExternalDatabaseLink
    domain_of:
    - ExternalDatabaseLink
    range: string
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ExternalDatabaseLink
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean