ExpressionPatternDTO

DTO for an ExpressionPattern, capturing the spatial and temporal aspects of an expression annotation.

classDiagram AuditedObjectDTO <|-- ExpressionPatternDTO ExpressionPatternDTO : created_by_curie ExpressionPatternDTO : date_created ExpressionPatternDTO : date_updated ExpressionPatternDTO : db_date_created ExpressionPatternDTO : db_date_updated ExpressionPatternDTO : internal ExpressionPatternDTO : obsolete ExpressionPatternDTO : updated_by_curie ExpressionPatternDTO : when_expressed_dto ExpressionPatternDTO : where_expressed_dto

URI: alliance:ExpressionPatternDTO

Parent Classes

AuditedObjectDTO
- ExpressionPatternDTO

Slots

Name	Description
created_by_curie	Curie of the Person object representing the individual that created the entity
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
updated_by_curie	Curie of the Person object representing the individual that updated the entity
when_expressed_dto	The temporal aspect of an ExpressionPatternDTO.
where_expressed_dto	The spatial aspect of an ExpressionPatternDTO.

Mappings

Mapping Type	Mapped Value
self	['alliance:ExpressionPatternDTO']
native	['alliance:ExpressionPatternDTO']

LinkML Specification

Direct

name: ExpressionPatternDTO
description: DTO for an ExpressionPattern, capturing the spatial and temporal aspects
  of an expression annotation.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
slots:
- when_expressed_dto
- where_expressed_dto

Induced

name: ExpressionPatternDTO
description: DTO for an ExpressionPattern, capturing the spatial and temporal aspects
  of an expression annotation.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
attributes:
  when_expressed_dto:
    name: when_expressed_dto
    description: The temporal aspect of an ExpressionPatternDTO.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ExpressionPatternDTO
    alias: when_expressed_dto
    owner: ExpressionPatternDTO
    domain_of:
    - ExpressionPatternDTO
    range: TemporalContextDTO
    required: false
    multivalued: false
    inlined: true
  where_expressed_dto:
    name: where_expressed_dto
    description: The spatial aspect of an ExpressionPatternDTO.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ExpressionPatternDTO
    alias: where_expressed_dto
    owner: ExpressionPatternDTO
    domain_of:
    - ExpressionPatternDTO
    range: AnatomicalSiteDTO
    required: true
    multivalued: false
    inlined: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ExpressionPatternDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean