ExpressionPattern

An expression pattern, as defined by spatial and temporal attributes, including all qualifiers.

classDiagram AuditedObject <|-- ExpressionPattern ExpressionPattern : created_by ExpressionPattern : date_created ExpressionPattern : date_updated ExpressionPattern : db_date_created ExpressionPattern : db_date_updated ExpressionPattern : internal ExpressionPattern : obsolete ExpressionPattern : updated_by ExpressionPattern : when_expressed ExpressionPattern : where_expressed

URI: alliance:ExpressionPattern

Parent Classes

AuditedObject
- ExpressionPattern

Slots

Name	Description
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
updated_by	The individual that last modified the entity.
when_expressed	When some entity is observed to be present in a specimen. If no temporal information is available for an annotation, use a root stage term for the developmental_stage_start.
where_expressed	Where some entity is observed to be present in a specimen. If no spatial information is available for an annotation, use a root anatomical term for the anatomical_structure.

Mappings

Mapping Type	Mapped Value
self	['alliance:ExpressionPattern']
native	['alliance:ExpressionPattern']

LinkML Specification

Direct

name: ExpressionPattern
description: An expression pattern, as defined by spatial and temporal attributes,
  including all qualifiers.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- when_expressed
- where_expressed

Induced

name: ExpressionPattern
description: An expression pattern, as defined by spatial and temporal attributes,
  including all qualifiers.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
attributes:
  when_expressed:
    name: when_expressed
    description: When some entity is observed to be present in a specimen. If no temporal
      information is available for an annotation, use a root stage term for the developmental_stage_start.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ExpressionPattern
    multivalued: false
    alias: when_expressed
    owner: ExpressionPattern
    domain_of:
    - ExpressionPattern
    range: TemporalContext
    required: false
  where_expressed:
    name: where_expressed
    description: Where some entity is observed to be present in a specimen. If no
      spatial information is available for an annotation, use a root anatomical term
      for the anatomical_structure.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ExpressionPattern
    multivalued: false
    alias: where_expressed
    owner: ExpressionPattern
    domain_of:
    - ExpressionPattern
    range: AnatomicalSite
    required: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ExpressionPattern
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean