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ConstructDTO

None

ReagentDTOConstructDTOconstruct_component_dtosconstruct_full_name_dtoconstruct_symbol_dtoconstruct_synonym_dtoscreated_by_curiedata_provider_dtodate_createddate_updateddb_date_createddb_date_updatedinternalmod_internal_idobsoleteprimary_external_idreference_curiessecondary_identifiersupdated_by_curie

URI: alliance:ConstructDTO

Parent Classes

Slots

Name Description
construct_component_dtos None
construct_full_name_dto Holds between a Construct and a full name.
construct_symbol_dto Holds between a Construct and the one current accepted symbol
construct_synonym_dtos Holds between a Construct and a list of synonyms.
created_by_curie Curie of the Person object representing the individual that created the entity
data_provider_dto Ingest object representing the organization (e.g. MOD) from which the data was sourced and a CrossReference to that organisation's site
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal Classifies the entity as private (for internal use) or not (for public use).
mod_internal_id The model organism database (MOD) internal identifier for the object
obsolete Entity is no longer current.
primary_external_id The primary external (non-Alliance) database identifier/curie for the object. Note that this may be an external (non-Alliance member) identifier for an object, like a UniProt ID for a protein, and may act as the MOD's/Alliance member's primary key for the entity.
reference_curies External reference curies used for ingest
secondary_identifiers None
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:ConstructDTO']
native ['alliance:ConstructDTO']

LinkML Specification

Direct

name: ConstructDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: ReagentDTO
slots:
- construct_symbol_dto
- construct_full_name_dto
- construct_synonym_dtos
- construct_component_dtos
- reference_curies
slot_usage:
  construct_symbol_dto:
    name: construct_symbol_dto
    domain_of:
    - ConstructDTO
    required: true

Induced

name: ConstructDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: ReagentDTO
slot_usage:
  construct_symbol_dto:
    name: construct_symbol_dto
    domain_of:
    - ConstructDTO
    required: true
attributes:
  construct_symbol_dto:
    name: construct_symbol_dto
    description: Holds between a Construct and the one current accepted symbol
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ConstructDTO
    multivalued: false
    alias: construct_symbol_dto
    owner: ConstructDTO
    domain_of:
    - ConstructDTO
    range: SymbolSlotAnnotationDTO
    required: true
    inlined: true
  construct_full_name_dto:
    name: construct_full_name_dto
    description: Holds between a Construct and a full name.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ConstructDTO
    multivalued: false
    alias: construct_full_name_dto
    owner: ConstructDTO
    domain_of:
    - ConstructDTO
    range: NameSlotAnnotationDTO
    required: false
    inlined: true
  construct_synonym_dtos:
    name: construct_synonym_dtos
    description: Holds between a Construct and a list of synonyms.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ConstructDTO
    multivalued: true
    alias: construct_synonym_dtos
    owner: ConstructDTO
    domain_of:
    - ConstructDTO
    range: NameSlotAnnotationDTO
    inlined: true
    inlined_as_list: true
  construct_component_dtos:
    name: construct_component_dtos
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: construct_component_dtos
    owner: ConstructDTO
    domain_of:
    - ConstructDTO
    range: ConstructComponentSlotAnnotationDTO
    inlined: true
    inlined_as_list: true
  reference_curies:
    name: reference_curies
    description: External reference curies used for ingest
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: reference_curies
    owner: ConstructDTO
    domain_of:
    - AlleleDTO
    - SequenceTargetingReagentDTO
    - AntibodyDTO
    - ConstructDTO
    - AffectedGenomicModelDTO
    - HTPExpressionDatasetAnnotationDTO
    range: string
  secondary_identifiers:
    name: secondary_identifiers
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - secondary_ids
    multivalued: true
    alias: secondary_identifiers
    owner: ConstructDTO
    domain_of:
    - SequenceTargetingReagent
    - SequenceTargetingReagentDTO
    - Reagent
    - ReagentDTO
    - OntologyTerm
    - Figure
    - Image
    - ExternalDataBaseEntity
    - ExternalDataBaseEntityDTO
    range: uriorcurie
  primary_external_id:
    name: primary_external_id
    description: The primary external (non-Alliance) database identifier/curie for
      the object. Note that this may be an external (non-Alliance member) identifier
      for an object, like a UniProt ID for a protein, and may act as the MOD's/Alliance
      member's primary key for the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: primary_external_id
    owner: ConstructDTO
    domain_of:
    - SubmittedObject
    - SubmittedObjectDTO
    - Person
    - Annotation
    - AnnotationDTO
    range: string
  mod_internal_id:
    name: mod_internal_id
    description: The model organism database (MOD) internal identifier for the object
    notes:
    - This is required if primary_external_id is not submitted
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: mod_internal_id
    owner: ConstructDTO
    domain_of:
    - SubmittedObject
    - SubmittedObjectDTO
    - Annotation
    - AnnotationDTO
    range: string
  data_provider_dto:
    name: data_provider_dto
    description: Ingest object representing the organization (e.g. MOD) from which
      the data was sourced and a CrossReference to that organisation's site
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: data_provider_dto
    owner: ConstructDTO
    domain_of:
    - SubmittedObjectDTO
    - ChromosomeDTO
    - AssemblyComponentDTO
    - AnnotationDTO
    range: DataProviderDTO
    required: true
    inlined: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: ConstructDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ConstructDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: ConstructDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ConstructDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ConstructDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ConstructDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ConstructDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ConstructDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean