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ConstructComponentSlotAnnotationDTO

None

classDiagram SlotAnnotationDTO <|-- ConstructComponentSlotAnnotationDTO ConstructComponentSlotAnnotationDTO : component_symbol ConstructComponentSlotAnnotationDTO : created_by_curie ConstructComponentSlotAnnotationDTO : date_created ConstructComponentSlotAnnotationDTO : date_updated ConstructComponentSlotAnnotationDTO : db_date_created ConstructComponentSlotAnnotationDTO : db_date_updated ConstructComponentSlotAnnotationDTO : evidence_curies ConstructComponentSlotAnnotationDTO : internal ConstructComponentSlotAnnotationDTO : note_dtos ConstructComponentSlotAnnotationDTO : obsolete ConstructComponentSlotAnnotationDTO : relation_name ConstructComponentSlotAnnotationDTO : taxon_curie ConstructComponentSlotAnnotationDTO : taxon_text ConstructComponentSlotAnnotationDTO : updated_by_curie

URI: alliance:ConstructComponentSlotAnnotationDTO

Parent Classes

Slots

Name Description
component_symbol The free text of a symbol or name of a construct component for which no curie exists or is available
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_curies Curies of InformationContentEntity objects given as evidence
internal Classifies the entity as private (for internal use) or not (for public use).
note_dtos None
obsolete Entity is no longer current.
relation_name Name of VocabularyTerm representing relation of an Association
taxon_curie Curie of the NCBITaxonTerm representing the taxon from which the biological entity derives
taxon_text The free text reference to a species or general taxon (e.g. "Yeast") for a a biological entity for which the exact taxon curie is unknown or unavailable.
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:ConstructComponentSlotAnnotationDTO']
native ['alliance:ConstructComponentSlotAnnotationDTO']

LinkML Specification

Direct

name: ConstructComponentSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
slots:
- relation_name
- component_symbol
- note_dtos
- taxon_curie
- taxon_text

Induced

name: ConstructComponentSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
attributes:
  relation_name:
    name: relation_name
    description: Name of VocabularyTerm representing relation of an Association
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: relation_name
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - SequenceTargetingReagentGeneAssociationDTO
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - ConstructComponentSlotAnnotationDTO
    - LocationAssociationDTO
    range: string
    required: true
  component_symbol:
    name: component_symbol
    description: The free text of a symbol or name of a construct component for which
      no curie exists or is available
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: component_symbol
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    range: string
    required: true
  note_dtos:
    name: note_dtos
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: note_dtos
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - VariantDTO
    - AlleleDTO
    - AntibodyDTO
    - ConstructComponentSlotAnnotationDTO
    - ConstructGenomicEntityAssociationDTO
    - GeneDTO
    - AnnotationDTO
    - HTPExpressionDatasetSampleAnnotationDTO
    range: NoteDTO
    inlined: true
    inlined_as_list: true
  taxon_curie:
    name: taxon_curie
    description: Curie of the NCBITaxonTerm representing the taxon from which the
      biological entity derives
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: taxon_curie
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AntibodyDTO
    - ConstructComponentSlotAnnotationDTO
    - BiologicalEntityDTO
    - ChromosomeDTO
    range: string
  taxon_text:
    name: taxon_text
    description: The free text reference to a species or general taxon (e.g. "Yeast")
      for a a biological entity for which the exact taxon curie is unknown or unavailable.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: taxon_text
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    range: string
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence_curies
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ConstructComponentSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean