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ConstructComponentSlotAnnotation

None

classDiagram SlotAnnotation <|-- ConstructComponentSlotAnnotation ConstructComponentSlotAnnotation : component_symbol ConstructComponentSlotAnnotation : created_by ConstructComponentSlotAnnotation : date_created ConstructComponentSlotAnnotation : date_updated ConstructComponentSlotAnnotation : db_date_created ConstructComponentSlotAnnotation : db_date_updated ConstructComponentSlotAnnotation : evidence ConstructComponentSlotAnnotation : internal ConstructComponentSlotAnnotation : obsolete ConstructComponentSlotAnnotation : related_notes ConstructComponentSlotAnnotation : relation ConstructComponentSlotAnnotation : single_construct ConstructComponentSlotAnnotation : taxon ConstructComponentSlotAnnotation : taxon_text ConstructComponentSlotAnnotation : updated_by

URI: alliance:ConstructComponentSlotAnnotation

Parent Classes

Slots

Name Description
component_symbol The free text of a symbol or name of a construct component for which no curie exists or is available
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence The evidence that supports some assertion.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
related_notes Holds between an object and a list of related Note objects.
relation A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
single_construct None
taxon The taxon from which the biological entity derives.
taxon_text The free text reference to a species or general taxon (e.g. "Yeast") for a a biological entity for which the exact taxon curie is unknown or unavailable.
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:ConstructComponentSlotAnnotation']
native ['alliance:ConstructComponentSlotAnnotation']

LinkML Specification

Direct

name: ConstructComponentSlotAnnotation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotation
slots:
- single_construct
- relation
- component_symbol
- related_notes
- taxon
- taxon_text
slot_usage:
  single_construct:
    name: single_construct
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructSymbolSlotAnnotation
    - ConstructFullNameSlotAnnotation
    - ConstructSynonymSlotAnnotation
    required: true
  relation:
    name: relation
    notes:
    - 'The relation should be a VocabularyTerm with one of the following values -
      expresses (RO:0002292) / is_regulated_by (RO:0002334) / targets (RO:0002436).
      CV: ''Construct Genomic Entity Association Relation'''
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: VocabularyTerm
  component_symbol:
    name: component_symbol
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    required: true
  related_notes:
    name: related_notes
    domain_of:
    - Allele
    - Antibody
    - ConstructComponentSlotAnnotation
    - ConstructGenomicEntityAssociation
    - Gene
    - GeneChangeEventSlotAnnotation
    - Annotation
    - Variant
    - HTPExpressionDatasetSampleAnnotation
    - ExpressionExperiment
    required: false
  taxon:
    name: taxon
    domain_of:
    - Antibody
    - ConstructComponentSlotAnnotation
    - BiologicalEntity
    - Chromosome
    - Species
    - HTPExpressionDatasetSampleAnnotation
    - HTPExpressionDatasetSampleAnnotationDTO
    required: false
  taxon_text:
    name: taxon_text
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    required: false

Induced

name: ConstructComponentSlotAnnotation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotation
slot_usage:
  single_construct:
    name: single_construct
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructSymbolSlotAnnotation
    - ConstructFullNameSlotAnnotation
    - ConstructSynonymSlotAnnotation
    required: true
  relation:
    name: relation
    notes:
    - 'The relation should be a VocabularyTerm with one of the following values -
      expresses (RO:0002292) / is_regulated_by (RO:0002334) / targets (RO:0002436).
      CV: ''Construct Genomic Entity Association Relation'''
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: VocabularyTerm
  component_symbol:
    name: component_symbol
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    required: true
  related_notes:
    name: related_notes
    domain_of:
    - Allele
    - Antibody
    - ConstructComponentSlotAnnotation
    - ConstructGenomicEntityAssociation
    - Gene
    - GeneChangeEventSlotAnnotation
    - Annotation
    - Variant
    - HTPExpressionDatasetSampleAnnotation
    - ExpressionExperiment
    required: false
  taxon:
    name: taxon
    domain_of:
    - Antibody
    - ConstructComponentSlotAnnotation
    - BiologicalEntity
    - Chromosome
    - Species
    - HTPExpressionDatasetSampleAnnotation
    - HTPExpressionDatasetSampleAnnotationDTO
    required: false
  taxon_text:
    name: taxon_text
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    required: false
attributes:
  single_construct:
    name: single_construct
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: single_construct
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructSymbolSlotAnnotation
    - ConstructFullNameSlotAnnotation
    - ConstructSynonymSlotAnnotation
    range: Construct
    required: true
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    notes:
    - 'The relation should be a VocabularyTerm with one of the following values -
      expresses (RO:0002292) / is_regulated_by (RO:0002334) / targets (RO:0002436).
      CV: ''Construct Genomic Entity Association Relation'''
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: association_slot
    alias: relation
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: VocabularyTerm
    required: true
  component_symbol:
    name: component_symbol
    description: The free text of a symbol or name of a construct component for which
      no curie exists or is available
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: component_symbol
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    range: string
    required: true
  related_notes:
    name: related_notes
    description: Holds between an object and a list of related Note objects.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: related_notes
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - Allele
    - Antibody
    - ConstructComponentSlotAnnotation
    - ConstructGenomicEntityAssociation
    - Gene
    - GeneChangeEventSlotAnnotation
    - Annotation
    - Variant
    - HTPExpressionDatasetSampleAnnotation
    - ExpressionExperiment
    range: Note
    required: false
  taxon:
    name: taxon
    description: The taxon from which the biological entity derives.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: taxon
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - Antibody
    - ConstructComponentSlotAnnotation
    - BiologicalEntity
    - Chromosome
    - Species
    - HTPExpressionDatasetSampleAnnotation
    - HTPExpressionDatasetSampleAnnotationDTO
    range: NCBITaxonTerm
    required: false
  taxon_text:
    name: taxon_text
    description: The free text reference to a species or general taxon (e.g. "Yeast")
      for a a biological entity for which the exact taxon curie is unknown or unavailable.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: taxon_text
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    range: string
    required: false
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ConstructComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean