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ConstructCassetteAssociationDTO

Ingest class for the association class to capture the identity of a construct cassette that is part of the construct

classDiagram EvidenceAssociationDTO <|-- ConstructCassetteAssociationDTO ConstructCassetteAssociationDTO : cassette_identifier ConstructCassetteAssociationDTO : cassette_relation_name ConstructCassetteAssociationDTO : construct_identifier ConstructCassetteAssociationDTO : created_by_curie ConstructCassetteAssociationDTO : date_created ConstructCassetteAssociationDTO : date_updated ConstructCassetteAssociationDTO : db_date_created ConstructCassetteAssociationDTO : db_date_updated ConstructCassetteAssociationDTO : evidence_curies ConstructCassetteAssociationDTO : internal ConstructCassetteAssociationDTO : note_dtos ConstructCassetteAssociationDTO : obsolete ConstructCassetteAssociationDTO : updated_by_curie

URI: alliance:ConstructCassetteAssociationDTO

Parent Classes

Slots

Name Description
cassette_identifier Either the MOD curie or internal ID that was used in the submission of the associated cassette
cassette_relation_name Name of VocabularyTerm describing relationship between a subject entity and an object Cassette
construct_identifier Either the MOD curie or internal ID that was used in the submission of the associated construct
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_curies Curies of InformationContentEntity objects given as evidence
internal Classifies the entity as private (for internal use) or not (for public use).
note_dtos None
obsolete Entity is no longer current.
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:ConstructCassetteAssociationDTO']
native ['alliance:ConstructCassetteAssociationDTO']

LinkML Specification

Direct

name: ConstructCassetteAssociationDTO
description: Ingest class for the association class to capture the identity of a construct
  cassette that is part of the construct
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
slots:
- construct_identifier
- cassette_relation_name
- cassette_identifier
- note_dtos
slot_usage:
  genomic_entity_identifier:
    name: genomic_entity_identifier
    required: true

Induced

name: ConstructCassetteAssociationDTO
description: Ingest class for the association class to capture the identity of a construct
  cassette that is part of the construct
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
slot_usage:
  genomic_entity_identifier:
    name: genomic_entity_identifier
    required: true
attributes:
  construct_identifier:
    name: construct_identifier
    description: Either the MOD curie or internal ID that was used in the submission
      of the associated construct
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: construct_identifier
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AlleleConstructAssociationDTO
    - ConstructGenomicEntityAssociationDTO
    - ConstructCassetteAssociationDTO
    range: string
    required: true
  cassette_relation_name:
    name: cassette_relation_name
    description: Name of VocabularyTerm describing relationship between a subject
      entity and an object Cassette
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: cassette_relation_name
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - ConstructCassetteAssociationDTO
    range: string
    required: true
  cassette_identifier:
    name: cassette_identifier
    description: Either the MOD curie or internal ID that was used in the submission
      of the associated cassette
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: cassette_identifier
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - ConstructCassetteAssociationDTO
    - CassetteGenomicEntityAssociationDTO
    - CassetteTransgenicToolAssociationDTO
    range: string
    required: false
  note_dtos:
    name: note_dtos
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: note_dtos
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AlleleDTO
    - GeneDTO
    - ReagentDTO
    - ConstructComponentSlotAnnotationDTO
    - ConstructGenomicEntityAssociationDTO
    - ConstructCassetteAssociationDTO
    - CassetteComponentSlotAnnotationDTO
    - CassetteGenomicEntityAssociationDTO
    - CassetteTransgenicToolAssociationDTO
    - AnnotationDTO
    - HTPExpressionDatasetSampleAnnotationDTO
    - VariantDTO
    range: NoteDTO
    multivalued: true
    inlined: true
    inlined_as_list: true
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence_curies
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
    multivalued: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ConstructCassetteAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean