ConditionRelationDTO

Ingest class for the pairing of an experimental condition relation with a list of one or more conditions

classDiagram AuditedObjectDTO <|-- ConditionRelationDTO ConditionRelationDTO : condition_dtos ConditionRelationDTO : condition_relation_type_name ConditionRelationDTO : created_by_curie ConditionRelationDTO : date_created ConditionRelationDTO : date_updated ConditionRelationDTO : db_date_created ConditionRelationDTO : db_date_updated ConditionRelationDTO : handle ConditionRelationDTO : internal ConditionRelationDTO : obsolete ConditionRelationDTO : reference_curie ConditionRelationDTO : updated_by_curie

URI: alliance:ConditionRelationDTO

Parent Classes

AuditedObjectDTO
- ConditionRelationDTO

Slots

Name	Description
condition_dtos	None
condition_relation_type_name	Name of VocabularyTerm from 'Condition relation types' vocabulary
created_by_curie	Curie of the Person object representing the individual that created the entity
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
handle	A slot pointing to a free-text alias or 'handle' for a data object, such as a reference-specific alias for a data object used while curating.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
reference_curie	External reference curie used for ingest
updated_by_curie	Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type	Mapped Value
self	['alliance:ConditionRelationDTO']
native	['alliance:ConditionRelationDTO']

LinkML Specification

Direct

name: ConditionRelationDTO
description: Ingest class for the pairing of an experimental condition relation with
  a list of one or more conditions
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
slots:
- handle
- reference_curie
- condition_relation_type_name
- condition_dtos
slot_usage:
  condition_relation_type_name:
    name: condition_relation_type_name
    domain_of:
    - ConditionRelationDTO
    required: true
  condition_dtos:
    name: condition_dtos
    domain_of:
    - ConditionRelationDTO
    required: true

Induced

name: ConditionRelationDTO
description: Ingest class for the pairing of an experimental condition relation with
  a list of one or more conditions
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
slot_usage:
  condition_relation_type_name:
    name: condition_relation_type_name
    domain_of:
    - ConditionRelationDTO
    required: true
  condition_dtos:
    name: condition_dtos
    domain_of:
    - ConditionRelationDTO
    required: true
attributes:
  handle:
    name: handle
    description: A slot pointing to a free-text alias or 'handle' for a data object,
      such as a reference-specific alias for a data object used while curating.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: handle
    owner: ConditionRelationDTO
    domain_of:
    - ConditionRelation
    - ConditionRelationDTO
    range: string
  reference_curie:
    name: reference_curie
    description: External reference curie used for ingest
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: reference_curie
    owner: ConditionRelationDTO
    domain_of:
    - SourceVariantGenomicLocationAssociationDTO
    - SourceVariantTranscriptLocationAssociationDTO
    - SourceVariantPolypeptideLocationAssociationDTO
    - SingleReferenceAssociationDTO
    - ConditionRelationDTO
    range: string
  condition_relation_type_name:
    name: condition_relation_type_name
    description: Name of VocabularyTerm from 'Condition relation types' vocabulary
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ConditionRelationDTO
    alias: condition_relation_type_name
    owner: ConditionRelationDTO
    domain_of:
    - ConditionRelationDTO
    range: string
    required: true
  condition_dtos:
    name: condition_dtos
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ConditionRelationDTO
    multivalued: true
    alias: condition_dtos
    owner: ConditionRelationDTO
    domain_of:
    - ConditionRelationDTO
    range: ExperimentalConditionDTO
    required: true
    inlined: true
    inlined_as_list: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ConditionRelationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean