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ChangeEventSlotAnnotationDTO

DTO parent for change events. Subclasses introduce the entity-identifier slot for the type of entity to which the change event applies.

classDiagram SlotAnnotationDTO <|-- ChangeEventSlotAnnotationDTO ChangeEventSlotAnnotationDTO : acquires_in_merge_curies ChangeEventSlotAnnotationDTO : created_by_curie ChangeEventSlotAnnotationDTO : current_version ChangeEventSlotAnnotationDTO : date_created ChangeEventSlotAnnotationDTO : date_updated ChangeEventSlotAnnotationDTO : db_date_created ChangeEventSlotAnnotationDTO : db_date_updated ChangeEventSlotAnnotationDTO : event_status_name ChangeEventSlotAnnotationDTO : event_type_name ChangeEventSlotAnnotationDTO : evidence_curies ChangeEventSlotAnnotationDTO : full_name_renamed_from ChangeEventSlotAnnotationDTO : full_name_renamed_to ChangeEventSlotAnnotationDTO : internal ChangeEventSlotAnnotationDTO : merged_into_curie ChangeEventSlotAnnotationDTO : note_dtos ChangeEventSlotAnnotationDTO : obsolete ChangeEventSlotAnnotationDTO : split_from_curie ChangeEventSlotAnnotationDTO : split_into_curies ChangeEventSlotAnnotationDTO : symbol_renamed_from ChangeEventSlotAnnotationDTO : symbol_renamed_to ChangeEventSlotAnnotationDTO : updated_by_curie

URI: alliance:ChangeEventSlotAnnotationDTO

Parent Classes

Children

Slots

Name Description
acquires_in_merge_curies Curies of the entities subsumed by an entity that persists through a merge.
created_by_curie Curie of the Person object representing the individual that created the entity
current_version The current version of the entity, generated by this nomenclature event. It starts at one, and is incremented by one with every major change.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
event_status_name Name of the VocabularyTerm describing the status of an event change: provisional or approved.
event_type_name Name of the VocabularyTerm describing the category of major change event for an entity.
evidence_curies Curies of InformationContentEntity objects given as evidence
full_name_renamed_from The previous full_name for a renamed entity.
full_name_renamed_to The new full_name for a renamed entity.
internal Classifies the entity as private (for internal use) or not (for public use).
merged_into_curie Curie of the entity into which a deprecated entity was merged.
note_dtos None
obsolete Entity is no longer current.
split_from_curie Curie of the entity from which an entity was split.
split_into_curies Curies of the entities generated by a split of a deprecated entity.
symbol_renamed_from The previous symbol for a renamed entity.
symbol_renamed_to The new symbol for a renamed entity.
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:ChangeEventSlotAnnotationDTO']
native ['alliance:ChangeEventSlotAnnotationDTO']

LinkML Specification

Direct

name: ChangeEventSlotAnnotationDTO
description: DTO parent for change events. Subclasses introduce the entity-identifier
  slot for the type of entity to which the change event applies.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
abstract: true
slots:
- event_type_name
- event_status_name
- current_version
- note_dtos
- acquires_in_merge_curies
- merged_into_curie
- split_from_curie
- split_into_curies
- symbol_renamed_to
- symbol_renamed_from
- full_name_renamed_to
- full_name_renamed_from
slot_usage:
  event_status_name:
    name: event_status_name
    required: false
  current_version:
    name: current_version
    required: false

Induced

name: ChangeEventSlotAnnotationDTO
description: DTO parent for change events. Subclasses introduce the entity-identifier
  slot for the type of entity to which the change event applies.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
abstract: true
slot_usage:
  event_status_name:
    name: event_status_name
    required: false
  current_version:
    name: current_version
    required: false
attributes:
  event_type_name:
    name: event_type_name
    description: Name of the VocabularyTerm describing the category of major change
      event for an entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: event_type_name
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotationDTO
    range: string
    required: true
    multivalued: false
  event_status_name:
    name: event_status_name
    description: 'Name of the VocabularyTerm describing the status of an event change:
      provisional or approved.'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: event_status_name
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  current_version:
    name: current_version
    description: The current version of the entity, generated by this nomenclature
      event. It starts at one, and is incremented by one with every major change.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: current_version
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: integer
    required: false
    multivalued: false
  note_dtos:
    name: note_dtos
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: note_dtos
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - SubmittedObjectDTO
    - ChangeEventSlotAnnotationDTO
    - ConstructComponentSlotAnnotationDTO
    - ConstructGenomicEntityAssociationDTO
    - ConstructCassetteAssociationDTO
    - CassetteComponentSlotAnnotationDTO
    - CassetteGenomicEntityAssociationDTO
    - CassetteTransgenicToolAssociationDTO
    - CassetteStrAssociationDTO
    - AnnotationDTO
    - HTPExpressionDatasetSampleAnnotationDTO
    range: NoteDTO
    multivalued: true
    inlined: true
    inlined_as_list: true
  acquires_in_merge_curies:
    name: acquires_in_merge_curies
    description: Curies of the entities subsumed by an entity that persists through
      a merge.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: acquires_in_merge_curies
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: true
  merged_into_curie:
    name: merged_into_curie
    description: Curie of the entity into which a deprecated entity was merged.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: merged_into_curie
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  split_from_curie:
    name: split_from_curie
    description: Curie of the entity from which an entity was split.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: split_from_curie
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  split_into_curies:
    name: split_into_curies
    description: Curies of the entities generated by a split of a deprecated entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: split_into_curies
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: true
  symbol_renamed_to:
    name: symbol_renamed_to
    description: The new symbol for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: symbol_renamed_to
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  symbol_renamed_from:
    name: symbol_renamed_from
    description: The previous symbol for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: symbol_renamed_from
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  full_name_renamed_to:
    name: full_name_renamed_to
    description: The new full_name for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: full_name_renamed_to
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  full_name_renamed_from:
    name: full_name_renamed_from
    description: The previous full_name for a renamed entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: full_name_renamed_from
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - ChangeEventSlotAnnotation
    - ChangeEventSlotAnnotationDTO
    range: string
    required: false
    multivalued: false
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence_curies
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
    multivalued: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: ChangeEventSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean