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CassetteUseSlotAnnotation

A slot annotation to capture the use(s) (e.g. enhancer trap, protein trap) of a particular Cassette with associated evidence.

classDiagram SlotAnnotation <|-- CassetteUseSlotAnnotation CassetteUseSlotAnnotation : created_by CassetteUseSlotAnnotation : date_created CassetteUseSlotAnnotation : date_updated CassetteUseSlotAnnotation : db_date_created CassetteUseSlotAnnotation : db_date_updated CassetteUseSlotAnnotation : evidence CassetteUseSlotAnnotation : internal CassetteUseSlotAnnotation : obsolete CassetteUseSlotAnnotation : single_cassette CassetteUseSlotAnnotation : updated_by CassetteUseSlotAnnotation : uses

URI: alliance:CassetteUseSlotAnnotation

Parent Classes

Slots

Name Description
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence The evidence that supports some assertion.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
single_cassette None
updated_by The individual that last modified the entity.
uses Holds between a TransgenicTool and a list of FBcv terms with namespace 'experimental_tool_descriptor'

Mappings

Mapping Type Mapped Value
self ['alliance:CassetteUseSlotAnnotation']
native ['alliance:CassetteUseSlotAnnotation']

LinkML Specification

Direct

name: CassetteUseSlotAnnotation
description: A slot annotation to capture the use(s) (e.g. enhancer trap, protein
  trap) of a particular Cassette with associated evidence.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotation
slots:
- single_cassette
- uses
slot_usage:
  single_cassette:
    name: single_cassette
    required: true
  uses:
    name: uses
    required: true

Induced

name: CassetteUseSlotAnnotation
description: A slot annotation to capture the use(s) (e.g. enhancer trap, protein
  trap) of a particular Cassette with associated evidence.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotation
slot_usage:
  single_cassette:
    name: single_cassette
    required: true
  uses:
    name: uses
    required: true
attributes:
  single_cassette:
    name: single_cassette
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: single_cassette
    owner: CassetteUseSlotAnnotation
    domain_of:
    - CassetteComponentSlotAnnotation
    - CassetteSymbolSlotAnnotation
    - CassetteFullNameSlotAnnotation
    - CassetteSynonymSlotAnnotation
    - CassetteUseSlotAnnotation
    range: Cassette
    required: true
    multivalued: false
  uses:
    name: uses
    description: Holds between a TransgenicTool and a list of FBcv terms with namespace
      'experimental_tool_descriptor'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: uses
    owner: CassetteUseSlotAnnotation
    domain_of:
    - CassetteUseSlotAnnotation
    - TransgenicTool
    range: FBCVTerm
    required: true
    multivalued: true
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence
    owner: CassetteUseSlotAnnotation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
    multivalued: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: created_by
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: updated_by
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: CassetteUseSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean