CassetteTransgenicToolAssociationDTO
Ingest class for association between a cassette component that is a known transgenic tool and any accompanying meta data about the relationship between the cassette and that transgenic tool component
classDiagram
EvidenceAssociationDTO <|-- CassetteTransgenicToolAssociationDTO
CassetteTransgenicToolAssociationDTO : cassette_identifier
CassetteTransgenicToolAssociationDTO : created_by_curie
CassetteTransgenicToolAssociationDTO : date_created
CassetteTransgenicToolAssociationDTO : date_updated
CassetteTransgenicToolAssociationDTO : db_date_created
CassetteTransgenicToolAssociationDTO : db_date_updated
CassetteTransgenicToolAssociationDTO : evidence_curies
CassetteTransgenicToolAssociationDTO : internal
CassetteTransgenicToolAssociationDTO : note_dtos
CassetteTransgenicToolAssociationDTO : obsolete
CassetteTransgenicToolAssociationDTO : transgenic_tool_identifier
CassetteTransgenicToolAssociationDTO : transgenic_tool_relation_name
CassetteTransgenicToolAssociationDTO : updated_by_curie
URI: alliance:CassetteTransgenicToolAssociationDTO
Parent Classes
- AuditedObjectDTO
- EvidenceAssociationDTO
- CassetteTransgenicToolAssociationDTO
- EvidenceAssociationDTO
Slots
Name | Description |
---|---|
cassette_identifier | Either the MOD curie or internal ID that was used in the submission of the associated cassette |
created_by_curie | Curie of the Person object representing the individual that created the entity |
date_created | The date on which an entity was created. This can be applied to nodes or edges. |
date_updated | Date on which an entity was last modified. |
db_date_created | The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data). |
db_date_updated | Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database. |
evidence_curies | Curies of InformationContentEntity objects given as evidence |
internal | Classifies the entity as private (for internal use) or not (for public use). |
note_dtos | None |
obsolete | Entity is no longer current. |
transgenic_tool_identifier | Either the MOD curie or internal ID that was used in the submission of the associated transgenic tool |
transgenic_tool_relation_name | Name of the VocabularyTerm describing the relationship between a TransgenicTool and another TransgenicTool |
updated_by_curie | Curie of the Person object representing the individual that updated the entity |
Mappings
Mapping Type | Mapped Value |
---|---|
self | ['alliance:CassetteTransgenicToolAssociationDTO'] |
native | ['alliance:CassetteTransgenicToolAssociationDTO'] |
LinkML Specification
Direct
name: CassetteTransgenicToolAssociationDTO
description: Ingest class for association between a cassette component that is a known
transgenic tool and any accompanying meta data about the relationship between the
cassette and that transgenic tool component
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
slots:
- cassette_identifier
- transgenic_tool_relation_name
- transgenic_tool_identifier
- note_dtos
slot_usage:
transgenic_tool_identifier:
name: transgenic_tool_identifier
required: true
Induced
name: CassetteTransgenicToolAssociationDTO
description: Ingest class for association between a cassette component that is a known
transgenic tool and any accompanying meta data about the relationship between the
cassette and that transgenic tool component
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
slot_usage:
transgenic_tool_identifier:
name: transgenic_tool_identifier
required: true
attributes:
cassette_identifier:
name: cassette_identifier
description: Either the MOD curie or internal ID that was used in the submission
of the associated cassette
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: cassette_identifier
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- ConstructCassetteAssociationDTO
- CassetteGenomicEntityAssociationDTO
- CassetteTransgenicToolAssociationDTO
range: string
required: false
transgenic_tool_relation_name:
name: transgenic_tool_relation_name
description: Name of the VocabularyTerm describing the relationship between a
TransgenicTool and another TransgenicTool
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
domain: ConstructGenomicEntityAssociationDTO
alias: transgenic_tool_relation_name
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- CassetteTransgenicToolAssociationDTO
range: string
required: true
transgenic_tool_identifier:
name: transgenic_tool_identifier
description: Either the MOD curie or internal ID that was used in the submission
of the associated transgenic tool
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: transgenic_tool_identifier
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- CassetteTransgenicToolAssociationDTO
range: string
required: true
note_dtos:
name: note_dtos
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: note_dtos
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AlleleDTO
- GeneDTO
- ReagentDTO
- ConstructComponentSlotAnnotationDTO
- ConstructGenomicEntityAssociationDTO
- ConstructCassetteAssociationDTO
- CassetteComponentSlotAnnotationDTO
- CassetteGenomicEntityAssociationDTO
- CassetteTransgenicToolAssociationDTO
- AnnotationDTO
- HTPExpressionDatasetSampleAnnotationDTO
- VariantDTO
range: NoteDTO
multivalued: true
inlined: true
inlined_as_list: true
evidence_curies:
name: evidence_curies
description: Curies of InformationContentEntity objects given as evidence
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: evidence_curies
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- NoteDTO
- SlotAnnotationDTO
- EvidenceAssociationDTO
- GeneGeneAssociationDTO
range: string
multivalued: true
created_by_curie:
name: created_by_curie
description: Curie of the Person object representing the individual that created
the entity
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
domain: AuditedObjectDTO
alias: created_by_curie
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObjectDTO
range: string
date_created:
name: date_created
description: The date on which an entity was created. This can be applied to nodes
or edges.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- creation_date
exact_mappings:
- dct:createdOn
- WIKIDATA_PROPERTY:P577
alias: date_created
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
updated_by_curie:
name: updated_by_curie
description: Curie of the Person object representing the individual that updated
the entity
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
domain: AuditedObjectDTO
alias: updated_by_curie
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObjectDTO
range: string
date_updated:
name: date_updated
description: Date on which an entity was last modified.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- date_last_modified
alias: date_updated
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
db_date_created:
name: db_date_created
description: The date on which an entity was created in the Alliance database. This
is distinct from date_created, which represents the date when the entity was
originally created (i.e. at the MOD for imported data).
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: db_date_created
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
db_date_updated:
name: db_date_updated
description: Date on which an entity was last modified in the Alliance database. This
is distinct from date_updated, which represents the date when the entity was
last modified and may predate import into the Alliance database.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: db_date_updated
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
internal:
name: internal
description: Classifies the entity as private (for internal use) or not (for public
use).
notes:
- Default value is true.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: internal
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObject
- AuditedObjectDTO
range: boolean
required: true
obsolete:
name: obsolete
description: Entity is no longer current.
notes:
- Obsolete entities are preserved in the database for posterity but should not
be publicly displayed.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: obsolete
owner: CassetteTransgenicToolAssociationDTO
domain_of:
- AuditedObject
- AuditedObjectDTO
range: boolean