CassetteGenomicEntityAssociationDTO

Ingest class for association between a cassette component that is a known genomic entity with a curie and any accompanying meta data about the relationship between the cassette and that genomic entity component

classDiagram EvidenceAssociationDTO <|-- CassetteGenomicEntityAssociationDTO CassetteGenomicEntityAssociationDTO : cassette_identifier CassetteGenomicEntityAssociationDTO : component_type_curies CassetteGenomicEntityAssociationDTO : created_by_curie CassetteGenomicEntityAssociationDTO : date_created CassetteGenomicEntityAssociationDTO : date_updated CassetteGenomicEntityAssociationDTO : db_date_created CassetteGenomicEntityAssociationDTO : db_date_updated CassetteGenomicEntityAssociationDTO : evidence_curies CassetteGenomicEntityAssociationDTO : genomic_entity_identifier CassetteGenomicEntityAssociationDTO : genomic_entity_relation_name CassetteGenomicEntityAssociationDTO : internal CassetteGenomicEntityAssociationDTO : note_dtos CassetteGenomicEntityAssociationDTO : obsolete CassetteGenomicEntityAssociationDTO : updated_by_curie

URI: alliance:CassetteGenomicEntityAssociationDTO

Parent Classes

AuditedObjectDTO
- EvidenceAssociationDTO
  - CassetteGenomicEntityAssociationDTO

Slots

Name	Description
cassette_identifier	Either the MOD curie or internal ID that was used in the submission of the associated cassette
component_type_curies	Curies of SOTerms representing the nature of Construct Cassette components
created_by_curie	Curie of the Person object representing the individual that created the entity
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_curies	Curies of InformationContentEntity objects given as evidence
genomic_entity_identifier	None
genomic_entity_relation_name	Name of the VocabularyTerm describing the relationship between Construct and GenomicEntity
internal	Classifies the entity as private (for internal use) or not (for public use).
note_dtos	None
obsolete	Entity is no longer current.
updated_by_curie	Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type	Mapped Value
self	['alliance:CassetteGenomicEntityAssociationDTO']
native	['alliance:CassetteGenomicEntityAssociationDTO']

LinkML Specification

Direct

name: CassetteGenomicEntityAssociationDTO
description: Ingest class for association between a cassette component that is a known
  genomic entity with a curie and any accompanying meta data about the relationship
  between the cassette and that genomic entity component
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
slots:
- cassette_identifier
- genomic_entity_relation_name
- genomic_entity_identifier
- note_dtos
- component_type_curies
slot_usage:
  genomic_entity_identifier:
    name: genomic_entity_identifier
    required: true

Induced

name: CassetteGenomicEntityAssociationDTO
description: Ingest class for association between a cassette component that is a known
  genomic entity with a curie and any accompanying meta data about the relationship
  between the cassette and that genomic entity component
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: EvidenceAssociationDTO
slot_usage:
  genomic_entity_identifier:
    name: genomic_entity_identifier
    required: true
attributes:
  cassette_identifier:
    name: cassette_identifier
    description: Either the MOD curie or internal ID that was used in the submission
      of the associated cassette
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: cassette_identifier
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - ConstructCassetteAssociationDTO
    - CassetteGenomicEntityAssociationDTO
    - CassetteTransgenicToolAssociationDTO
    range: string
    required: false
  genomic_entity_relation_name:
    name: genomic_entity_relation_name
    description: Name of the VocabularyTerm describing the relationship between Construct
      and GenomicEntity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: ConstructGenomicEntityAssociationDTO
    alias: genomic_entity_relation_name
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - ConstructGenomicEntityAssociationDTO
    - CassetteGenomicEntityAssociationDTO
    range: string
    required: true
  genomic_entity_identifier:
    name: genomic_entity_identifier
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: genomic_entity_identifier
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - ConstructGenomicEntityAssociationDTO
    - CassetteGenomicEntityAssociationDTO
    range: string
    required: true
  note_dtos:
    name: note_dtos
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: note_dtos
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AlleleDTO
    - GeneDTO
    - ReagentDTO
    - ConstructComponentSlotAnnotationDTO
    - ConstructGenomicEntityAssociationDTO
    - ConstructCassetteAssociationDTO
    - CassetteComponentSlotAnnotationDTO
    - CassetteGenomicEntityAssociationDTO
    - CassetteTransgenicToolAssociationDTO
    - AnnotationDTO
    - HTPExpressionDatasetSampleAnnotationDTO
    - VariantDTO
    range: NoteDTO
    multivalued: true
    inlined: true
    inlined_as_list: true
  component_type_curies:
    name: component_type_curies
    description: Curies of SOTerms representing the nature of Construct Cassette components
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: component_type_curies
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - CassetteGenomicEntityAssociationDTO
    range: string
    multivalued: true
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence_curies
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
    multivalued: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: CassetteGenomicEntityAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean