CassetteComponentSlotAnnotation

None

classDiagram SlotAnnotation <|-- CassetteComponentSlotAnnotation CassetteComponentSlotAnnotation : component_symbol CassetteComponentSlotAnnotation : created_by CassetteComponentSlotAnnotation : date_created CassetteComponentSlotAnnotation : date_updated CassetteComponentSlotAnnotation : db_date_created CassetteComponentSlotAnnotation : db_date_updated CassetteComponentSlotAnnotation : evidence CassetteComponentSlotAnnotation : internal CassetteComponentSlotAnnotation : obsolete CassetteComponentSlotAnnotation : related_notes CassetteComponentSlotAnnotation : relation CassetteComponentSlotAnnotation : single_cassette CassetteComponentSlotAnnotation : taxon CassetteComponentSlotAnnotation : taxon_text CassetteComponentSlotAnnotation : updated_by

URI: alliance:CassetteComponentSlotAnnotation

Parent Classes

AuditedObject
- SlotAnnotation
  - CassetteComponentSlotAnnotation

Slots

Name	Description
component_symbol	The free text of a symbol or name of a construct component for which no curie exists or is available
created_by	The individual that created the entity.
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence	The evidence that supports some assertion.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
related_notes	Holds between an object and a list of related Note objects.
relation	A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
single_cassette	None
taxon	The taxon from which the biological entity derives.
taxon_text	The free text reference to a species or general taxon (e.g. "Yeast") for a a biological entity for which the exact taxon curie is unknown or unavailable.
updated_by	The individual that last modified the entity.

Mappings

Mapping Type	Mapped Value
self	['alliance:CassetteComponentSlotAnnotation']
native	['alliance:CassetteComponentSlotAnnotation']

LinkML Specification

Direct

name: CassetteComponentSlotAnnotation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotation
slots:
- single_cassette
- relation
- component_symbol
- related_notes
- taxon
- taxon_text
slot_usage:
  single_cassette:
    name: single_cassette
    required: true
  relation:
    name: relation
    notes:
    - 'The relation should be a VocabularyTerm with one of the following values -
      expresses (RO:0002292) / is_regulated_by (RO:0002334) / targets (RO:0002436).
      CV: ''Cassette Genomic Entity Association Relation'''
    range: VocabularyTerm
  component_symbol:
    name: component_symbol
    required: true
  related_notes:
    name: related_notes
    required: false
  taxon:
    name: taxon
    required: false
  taxon_text:
    name: taxon_text
    required: false

Induced

name: CassetteComponentSlotAnnotation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotation
slot_usage:
  single_cassette:
    name: single_cassette
    required: true
  relation:
    name: relation
    notes:
    - 'The relation should be a VocabularyTerm with one of the following values -
      expresses (RO:0002292) / is_regulated_by (RO:0002334) / targets (RO:0002436).
      CV: ''Cassette Genomic Entity Association Relation'''
    range: VocabularyTerm
  component_symbol:
    name: component_symbol
    required: true
  related_notes:
    name: related_notes
    required: false
  taxon:
    name: taxon
    required: false
  taxon_text:
    name: taxon_text
    required: false
attributes:
  single_cassette:
    name: single_cassette
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: single_cassette
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - CassetteComponentSlotAnnotation
    - CassetteSymbolSlotAnnotation
    - CassetteFullNameSlotAnnotation
    - CassetteSynonymSlotAnnotation
    range: Cassette
    required: true
    multivalued: false
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    notes:
    - 'The relation should be a VocabularyTerm with one of the following values -
      expresses (RO:0002292) / is_regulated_by (RO:0002334) / targets (RO:0002436).
      CV: ''Cassette Genomic Entity Association Relation'''
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    exact_mappings:
    - biolink:predicate
    is_a: association_slot
    alias: relation
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - Association
    - ConstructComponentSlotAnnotation
    - CassetteComponentSlotAnnotation
    range: VocabularyTerm
    required: true
  component_symbol:
    name: component_symbol
    description: The free text of a symbol or name of a construct component for which
      no curie exists or is available
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: component_symbol
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    - CassetteComponentSlotAnnotation
    - CassetteComponentSlotAnnotationDTO
    range: string
    required: true
  related_notes:
    name: related_notes
    description: Holds between an object and a list of related Note objects.
    notes:
    - The original name suggested for this slot was simply notes, but I think that
      label is reserved in LinkML for internal descriptions of objects, hence the
      related_notes label used here.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: related_notes
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - Allele
    - Gene
    - GeneChangeEventSlotAnnotation
    - ExpressionExperiment
    - Reagent
    - ConstructComponentSlotAnnotation
    - ConstructGenomicEntityAssociation
    - ConstructCassetteAssociation
    - CassetteComponentSlotAnnotation
    - CassetteGenomicEntityAssociation
    - CassetteTransgenicToolAssociation
    - Annotation
    - HTPExpressionDatasetSampleAnnotation
    - Variant
    range: Note
    required: false
    multivalued: true
  taxon:
    name: taxon
    description: The taxon from which the biological entity derives.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: taxon
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - BiologicalEntity
    - Chromosome
    - Species
    - Antibody
    - ConstructComponentSlotAnnotation
    - CassetteComponentSlotAnnotation
    - HTPExpressionDatasetSampleAnnotation
    - HTPExpressionDatasetSampleAnnotationDTO
    range: NCBITaxonTerm
    required: false
    multivalued: false
  taxon_text:
    name: taxon_text
    description: The free text reference to a species or general taxon (e.g. "Yeast")
      for a a biological entity for which the exact taxon curie is unknown or unavailable.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: taxon_text
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - ConstructComponentSlotAnnotation
    - ConstructComponentSlotAnnotationDTO
    - CassetteComponentSlotAnnotation
    - CassetteComponentSlotAnnotationDTO
    range: string
    required: false
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
    multivalued: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: created_by
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: updated_by
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: CassetteComponentSlotAnnotation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean