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BulkManualLoad

This bulk load is used by DQM's to submit their files to the curation system

classDiagram BulkLoad <|-- BulkManualLoad BulkManualLoad : backend_bulk_load_type BulkManualLoad : backend_load_type BulkManualLoad : bulkload_group BulkManualLoad : bulkload_status BulkManualLoad : created_by BulkManualLoad : date_created BulkManualLoad : date_updated BulkManualLoad : db_date_created BulkManualLoad : db_date_updated BulkManualLoad : error_message BulkManualLoad : internal BulkManualLoad : load_files BulkManualLoad : name BulkManualLoad : obsolete BulkManualLoad : ontology_type BulkManualLoad : updated_by

URI: alliance:BulkManualLoad

Parent Classes

Slots

Name Description
backend_bulk_load_type None
backend_load_type None
bulkload_group Bulk load group designed to group together bulk loads
bulkload_status Status used to capture the progress of the load
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
error_message Error message for curation reports
internal Classifies the entity as private (for internal use) or not (for public use).
load_files None
name a human-readable name for an entity
obsolete Entity is no longer current.
ontology_type None
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:BulkManualLoad']
native ['alliance:BulkManualLoad']

LinkML Specification

Direct

name: BulkManualLoad
description: This bulk load is used by DQM's to submit their files to the curation
  system
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: BulkLoad
slots:
- backend_load_type

Induced

name: BulkManualLoad
description: This bulk load is used by DQM's to submit their files to the curation
  system
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: BulkLoad
attributes:
  backend_load_type:
    name: backend_load_type
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: backend_load_type
    owner: BulkManualLoad
    domain_of:
    - BulkManualLoad
    range: backend_bulk_data_type_enum
  name:
    name: name
    description: a human-readable name for an entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: name
    owner: BulkManualLoad
    domain_of:
    - SequenceTargetingReagent
    - SequenceTargetingReagentDTO
    - Antibody
    - AntibodyDTO
    - Transcript
    - TranscriptDTO
    - Exon
    - ExonDTO
    - CodingSequence
    - CodingSequenceDTO
    - Chromosome
    - ChromosomeDTO
    - AssemblyComponent
    - AssemblyComponentDTO
    - Protein
    - ProteinDTO
    - AffectedGenomicModel
    - AffectedGenomicModelDTO
    - ResourceDescriptor
    - ResourceDescriptorPage
    - VocabularyTerm
    - Vocabulary
    - VocabularyTermSet
    - OntologyTerm
    - HTPExpressionDatasetAnnotation
    - HTPExpressionDatasetAnnotationDTO
    - CurationReportGroup
    - CurationReport
    - BulkLoadGroup
    - BulkLoad
    range: string
  bulkload_status:
    name: bulkload_status
    description: Status used to capture the progress of the load
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: bulkload_status
    owner: BulkManualLoad
    domain_of:
    - BulkLoad
    - BulkLoadFile
    range: bulk_load_status_enum
  error_message:
    name: error_message
    description: Error message for curation reports
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: CurationReport
    alias: error_message
    owner: BulkManualLoad
    domain_of:
    - CurationReport
    - BulkLoad
    - BulkLoadFile
    range: string
  backend_bulk_load_type:
    name: backend_bulk_load_type
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: backend_bulk_load_type
    owner: BulkManualLoad
    domain_of:
    - BulkLoad
    range: backend_bulk_load_type_enum
  ontology_type:
    name: ontology_type
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: ontology_type
    owner: BulkManualLoad
    domain_of:
    - BulkLoad
    range: ontology_bulk_load_type_enum
  bulkload_group:
    name: bulkload_group
    description: Bulk load group designed to group together bulk loads
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: bulkload_group
    owner: BulkManualLoad
    domain_of:
    - BulkLoad
    range: BulkLoadGroup
  load_files:
    name: load_files
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: load_files
    owner: BulkManualLoad
    domain_of:
    - BulkLoad
    range: BulkLoadFile
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: BulkManualLoad
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean