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BioSampleAge

An object that holds the temporal aspect of a sample.

classDiagram AuditedObject <|-- BioSampleAge BioSampleAge : age BioSampleAge : created_by BioSampleAge : date_created BioSampleAge : date_updated BioSampleAge : db_date_created BioSampleAge : db_date_updated BioSampleAge : internal BioSampleAge : obsolete BioSampleAge : stage BioSampleAge : updated_by BioSampleAge : when_expressed_stage_name

URI: alliance:BioSampleAge

Parent Classes

Slots

Name Description
age free text for the age of the sample
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
stage The life stage of an organism or biosample as expressed by a TemporalContext entity
updated_by The individual that last modified the entity.
when_expressed_stage_name A human-readable stage name. To be used when an ontology term for the relevant stage is not available.

Mappings

Mapping Type Mapped Value
self ['alliance:BioSampleAge']
native ['alliance:BioSampleAge']

LinkML Specification

Direct

name: BioSampleAge
description: An object that holds the temporal aspect of a sample.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- stage
- age
- when_expressed_stage_name
slot_usage:
  age:
    name: age
    description: free text for the age of the sample

Induced

name: BioSampleAge
description: An object that holds the temporal aspect of a sample.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slot_usage:
  age:
    name: age
    description: free text for the age of the sample
attributes:
  stage:
    name: stage
    description: The life stage of an organism or biosample as expressed by a TemporalContext
      entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: BioSampleAge
    alias: stage
    owner: BioSampleAge
    domain_of:
    - BioSampleAge
    range: TemporalContext
  age:
    name: age
    description: free text for the age of the sample
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: age
    owner: BioSampleAge
    domain_of:
    - TemporalContext
    - TemporalContextDTO
    - BioSampleAge
    - BioSampleAgeDTO
    range: string
    multivalued: false
  when_expressed_stage_name:
    name: when_expressed_stage_name
    description: A human-readable stage name. To be used when an ontology term for
      the relevant stage is not available.
    notes:
    - Corresponds to whenExpressed.stageName in frozen JSON schema.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: when_expressed_stage_name
    owner: BioSampleAge
    domain_of:
    - ExpressionAnnotation
    - BioSampleAge
    - BioSampleAgeDTO
    range: string
    multivalued: false
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: created_by
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    alias: updated_by
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    range: Person
    multivalued: false
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: BioSampleAge
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean