Analysis
An analysis of a dataset
classDiagram
SubmittedObject <|-- Analysis
Analysis : analysis_type
Analysis : created_by
Analysis : curie
Analysis : data_provider
Analysis : data_provider_cross_reference
Analysis : date_created
Analysis : date_updated
Analysis : db_date_created
Analysis : db_date_updated
Analysis : internal
Analysis : mod_internal_id
Analysis : obsolete
Analysis : primary_external_id
Analysis : related_notes
Analysis : updated_by
URI: alliance:Analysis
Parent Classes
Children
Slots
Name | Description |
---|---|
analysis_type | The type of analysis performed; the range of this will initially be the FBCV terms within the namespace "result_type" |
created_by | The individual that created the entity. |
curie | A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI |
data_provider | The organization (e.g. MOD) from which the data was sourced |
data_provider_cross_reference | CrossReference to the organization from which the data was sourced |
date_created | The date on which an entity was created. This can be applied to nodes or edges. |
date_updated | Date on which an entity was last modified. |
db_date_created | The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data). |
db_date_updated | Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database. |
internal | Classifies the entity as private (for internal use) or not (for public use). |
mod_internal_id | The model organism database (MOD) internal identifier for the object |
obsolete | Entity is no longer current. |
primary_external_id | The primary external (non-Alliance) database identifier/curie for the object. Note that this may be an external (non-Alliance member) identifier for an object, like a UniProt ID for a protein, and may act as the MOD's/Alliance member's primary key for the entity. |
related_notes | Valid note types are available for viewing in the A-Team curation tool (curation.alliancegenome.org) Controlled Vocabulary Terms Table (in the Note Type vocabulary). The subset of terms applicable for a particular entity type are listed in the Vocabulary Term Sets table (e.g. Allele Note Type). New terms can be added as needed. |
updated_by | The individual that last modified the entity. |
Mappings
Mapping Type | Mapped Value |
---|---|
self | ['alliance:Analysis'] |
native | ['alliance:Analysis'] |
LinkML Specification
Direct
name: Analysis
description: An analysis of a dataset
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SubmittedObject
slot_usage:
related_notes:
name: related_notes
notes:
- At least one valid note_type for an Analysis object is "analysis_protocol"
attributes:
analysis_type:
name: analysis_type
description: The type of analysis performed; the range of this will initially
be the FBCV terms within the namespace "result_type"
from_schema: https://github.com/alliance-genome/agr_curation_schema/core.yaml
domain_of:
- Analysis
range: FBCVTerm
Induced
name: Analysis
description: An analysis of a dataset
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SubmittedObject
slot_usage:
related_notes:
name: related_notes
notes:
- At least one valid note_type for an Analysis object is "analysis_protocol"
attributes:
analysis_type:
name: analysis_type
description: The type of analysis performed; the range of this will initially
be the FBCV terms within the namespace "result_type"
from_schema: https://github.com/alliance-genome/agr_curation_schema/core.yaml
alias: analysis_type
owner: Analysis
domain_of:
- Analysis
range: FBCVTerm
primary_external_id:
name: primary_external_id
description: The primary external (non-Alliance) database identifier/curie for
the object. Note that this may be an external (non-Alliance member) identifier
for an object, like a UniProt ID for a protein, and may act as the MOD's/Alliance
member's primary key for the entity.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: primary_external_id
owner: Analysis
domain_of:
- Person
- SubmittedObject
- SubmittedObjectDTO
- Annotation
- AnnotationDTO
range: string
mod_internal_id:
name: mod_internal_id
description: The model organism database (MOD) internal identifier for the object
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: mod_internal_id
owner: Analysis
domain_of:
- SubmittedObject
- SubmittedObjectDTO
- Annotation
- AnnotationDTO
range: string
data_provider:
name: data_provider
description: The organization (e.g. MOD) from which the data was sourced
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: data_provider
owner: Analysis
domain_of:
- SubmittedObject
- Chromosome
- Species
- Annotation
- HTPExpressionDatasetAnnotation
range: Organization
required: true
multivalued: false
data_provider_cross_reference:
name: data_provider_cross_reference
description: CrossReference to the organization from which the data was sourced
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: data_provider_cross_reference
owner: Analysis
domain_of:
- SubmittedObject
- Chromosome
- Species
- Annotation
- HTPExpressionDatasetAnnotation
range: CrossReference
required: false
multivalued: false
related_notes:
name: related_notes
description: Valid note types are available for viewing in the A-Team curation
tool (curation.alliancegenome.org) Controlled Vocabulary Terms Table (in the
Note Type vocabulary). The subset of terms applicable for a particular entity
type are listed in the Vocabulary Term Sets table (e.g. Allele Note Type). New
terms can be added as needed.
notes:
- At least one valid note_type for an Analysis object is "analysis_protocol"
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: related_notes
owner: Analysis
domain_of:
- SubmittedObject
- Gene
- GeneChangeEventSlotAnnotation
- ExpressionExperiment
- ConstructComponentSlotAnnotation
- ConstructGenomicEntityAssociation
- ConstructCassetteAssociation
- CassetteComponentSlotAnnotation
- CassetteGenomicEntityAssociation
- CassetteTransgenicToolAssociation
- CassetteStrAssociation
- Annotation
- HTPExpressionDatasetSampleAnnotation
range: Note
multivalued: true
curie:
name: curie
description: A unique identifier for a thing. Must be either a CURIE shorthand
for a URI or a complete URI
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: curie
owner: Analysis
domain_of:
- Laboratory
- CurieObject
- Identifier
- GeneNomenclatureSet
- OntologyTerm
- Annotation
- ExternalDataBaseEntityDTO
range: uriorcurie
multivalued: false
created_by:
name: created_by
description: The individual that created the entity.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
domain: AuditedObject
alias: created_by
owner: Analysis
domain_of:
- AuditedObject
range: Person
multivalued: false
date_created:
name: date_created
description: The date on which an entity was created. This can be applied to nodes
or edges.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- creation_date
exact_mappings:
- dct:createdOn
- WIKIDATA_PROPERTY:P577
alias: date_created
owner: Analysis
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
updated_by:
name: updated_by
description: The individual that last modified the entity.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
domain: AuditedObject
alias: updated_by
owner: Analysis
domain_of:
- AuditedObject
range: Person
multivalued: false
date_updated:
name: date_updated
description: Date on which an entity was last modified.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
aliases:
- date_last_modified
alias: date_updated
owner: Analysis
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
db_date_created:
name: db_date_created
description: The date on which an entity was created in the Alliance database. This
is distinct from date_created, which represents the date when the entity was
originally created (i.e. at the MOD for imported data).
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: db_date_created
owner: Analysis
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
db_date_updated:
name: db_date_updated
description: Date on which an entity was last modified in the Alliance database. This
is distinct from date_updated, which represents the date when the entity was
last modified and may predate import into the Alliance database.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: db_date_updated
owner: Analysis
domain_of:
- AuditedObject
- AuditedObjectDTO
range: datetime
internal:
name: internal
description: Classifies the entity as private (for internal use) or not (for public
use).
notes:
- Default value is true.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: internal
owner: Analysis
domain_of:
- AuditedObject
- AuditedObjectDTO
range: boolean
required: true
obsolete:
name: obsolete
description: Entity is no longer current.
notes:
- Obsolete entities are preserved in the database for posterity but should not
be publicly displayed.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
alias: obsolete
owner: Analysis
domain_of:
- AuditedObject
- AuditedObjectDTO
range: boolean