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AlleleProteinAssociationDTO

Association between an allele and a protein

classDiagram AlleleGenomicEntityAssociationDTO <|-- AlleleProteinAssociationDTO AlleleProteinAssociationDTO : allele_identifier AlleleProteinAssociationDTO : created_by_curie AlleleProteinAssociationDTO : date_created AlleleProteinAssociationDTO : date_updated AlleleProteinAssociationDTO : db_date_created AlleleProteinAssociationDTO : db_date_updated AlleleProteinAssociationDTO : evidence_code_curie AlleleProteinAssociationDTO : evidence_curies AlleleProteinAssociationDTO : internal AlleleProteinAssociationDTO : note_dto AlleleProteinAssociationDTO : obsolete AlleleProteinAssociationDTO : protein_identifier AlleleProteinAssociationDTO : relation_name AlleleProteinAssociationDTO : updated_by_curie

URI: alliance:AlleleProteinAssociationDTO

Parent Classes

Slots

Name Description
allele_identifier Identifier (curie/primary_external_id/mod_internal_id) of the allele
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_code_curie Curie of ECOTerm
evidence_curies Curies of InformationContentEntity objects given as evidence
internal Classifies the entity as private (for internal use) or not (for public use).
note_dto None
obsolete Entity is no longer current.
protein_identifier None
relation_name Name of VocabularyTerm representing relation of an Association
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:AlleleProteinAssociationDTO']
native ['alliance:AlleleProteinAssociationDTO']

LinkML Specification

Direct

name: AlleleProteinAssociationDTO
description: Association between an allele and a protein
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AlleleGenomicEntityAssociationDTO
slots:
- protein_identifier

Induced

name: AlleleProteinAssociationDTO
description: Association between an allele and a protein
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AlleleGenomicEntityAssociationDTO
attributes:
  protein_identifier:
    name: protein_identifier
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: protein_identifier
    owner: AlleleProteinAssociationDTO
    domain_of:
    - VariantPolypeptideLocationAssociationDTO
    - AlleleProteinAssociationDTO
    range: string
    required: true
  allele_identifier:
    name: allele_identifier
    description: Identifier (curie/primary_external_id/mod_internal_id) of the allele
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: allele_identifier
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - AffectedGenomicModelComponentDTO
    - AllelePhenotypeAnnotationDTO
    - AlleleDiseaseAnnotationDTO
    - BioSampleGenomicInformationDTO
    range: string
    required: true
  relation_name:
    name: relation_name
    description: Name of VocabularyTerm representing relation of an Association
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: relation_name
    owner: AlleleProteinAssociationDTO
    domain_of:
    - SequenceTargetingReagentGeneAssociationDTO
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - ConstructComponentSlotAnnotationDTO
    - LocationAssociationDTO
    range: string
    required: true
  evidence_code_curie:
    name: evidence_code_curie
    description: Curie of ECOTerm
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: evidence_code_curie
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AlleleGenomicEntityAssociationDTO
    range: string
  note_dto:
    name: note_dto
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: note_dto
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AlleleGenomicEntityAssociationDTO
    - HTPExpressionDatasetAnnotationDTO
    range: NoteDTO
    inlined: true
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence_curies
    owner: AlleleProteinAssociationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AlleleProteinAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean