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AlleleInheritanceModeSlotAnnotationDTO

None

classDiagram SlotAnnotationDTO <|-- AlleleInheritanceModeSlotAnnotationDTO AlleleInheritanceModeSlotAnnotationDTO : created_by_curie AlleleInheritanceModeSlotAnnotationDTO : date_created AlleleInheritanceModeSlotAnnotationDTO : date_updated AlleleInheritanceModeSlotAnnotationDTO : db_date_created AlleleInheritanceModeSlotAnnotationDTO : db_date_updated AlleleInheritanceModeSlotAnnotationDTO : evidence_curies AlleleInheritanceModeSlotAnnotationDTO : inheritance_mode_name AlleleInheritanceModeSlotAnnotationDTO : internal AlleleInheritanceModeSlotAnnotationDTO : obsolete AlleleInheritanceModeSlotAnnotationDTO : phenotype_statement AlleleInheritanceModeSlotAnnotationDTO : phenotype_term_curie AlleleInheritanceModeSlotAnnotationDTO : updated_by_curie

URI: alliance:AlleleInheritanceModeSlotAnnotationDTO

Parent Classes

Slots

Name Description
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_curies Curies of InformationContentEntity objects given as evidence
inheritance_mode_name Name of VocabularyTerm describing the inheritance mode from the 'Allele inheritance mode vocabulary', e.g. dominant / semi-dominant / recessive / unknown / codominant
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
phenotype_statement For some MODs, the inheritance mode of an allele is reported specifically in the context of a particular phenotype. This slot is intended to capture the free-text phenotype statement.
phenotype_term_curie For some MODs, the inheritance mode of an allele is reported specifically in the context of a particular phenotype. This slot is intended to capture the phenotype ontology term.
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:AlleleInheritanceModeSlotAnnotationDTO']
native ['alliance:AlleleInheritanceModeSlotAnnotationDTO']

LinkML Specification

Direct

name: AlleleInheritanceModeSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
slots:
- inheritance_mode_name
- phenotype_term_curie
- phenotype_statement
slot_usage:
  inheritance_mode_name:
    name: inheritance_mode_name
    domain_of:
    - AlleleInheritanceModeSlotAnnotationDTO
    required: true
  phenotype_term_curie:
    name: phenotype_term_curie
    description: For some MODs, the inheritance mode of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      phenotype ontology term.
    domain_of:
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotationDTO
    required: false
  phenotype_statement:
    name: phenotype_statement
    description: For some MODs, the inheritance mode of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      free-text phenotype statement.
    domain_of:
    - AlleleFunctionalImpactSlotAnnotation
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotation
    - AlleleInheritanceModeSlotAnnotationDTO
    - PhenotypeAnnotationDTO
    required: false

Induced

name: AlleleInheritanceModeSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
slot_usage:
  inheritance_mode_name:
    name: inheritance_mode_name
    domain_of:
    - AlleleInheritanceModeSlotAnnotationDTO
    required: true
  phenotype_term_curie:
    name: phenotype_term_curie
    description: For some MODs, the inheritance mode of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      phenotype ontology term.
    domain_of:
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotationDTO
    required: false
  phenotype_statement:
    name: phenotype_statement
    description: For some MODs, the inheritance mode of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      free-text phenotype statement.
    domain_of:
    - AlleleFunctionalImpactSlotAnnotation
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotation
    - AlleleInheritanceModeSlotAnnotationDTO
    - PhenotypeAnnotationDTO
    required: false
attributes:
  inheritance_mode_name:
    name: inheritance_mode_name
    description: Name of VocabularyTerm describing the inheritance mode from the 'Allele
      inheritance mode vocabulary', e.g. dominant / semi-dominant / recessive / unknown
      / codominant
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AlleleInheritanceModeSlotAnnotationDTO
    alias: inheritance_mode_name
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AlleleInheritanceModeSlotAnnotationDTO
    range: string
    required: true
  phenotype_term_curie:
    name: phenotype_term_curie
    description: For some MODs, the inheritance mode of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      phenotype ontology term.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: phenotype_term_curie
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotationDTO
    range: string
    required: false
  phenotype_statement:
    name: phenotype_statement
    description: For some MODs, the inheritance mode of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      free-text phenotype statement.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: phenotype_statement
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AlleleFunctionalImpactSlotAnnotation
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotation
    - AlleleInheritanceModeSlotAnnotationDTO
    - PhenotypeAnnotationDTO
    range: string
    required: false
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence_curies
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AlleleInheritanceModeSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean