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AlleleGenomicEntityAssociation

Association between an allele and a genomic entity

classDiagram AlleleAssociation <|-- AlleleGenomicEntityAssociation AlleleGenomicEntityAssociation : allele_association_subject AlleleGenomicEntityAssociation : created_by AlleleGenomicEntityAssociation : date_created AlleleGenomicEntityAssociation : date_updated AlleleGenomicEntityAssociation : db_date_created AlleleGenomicEntityAssociation : db_date_updated AlleleGenomicEntityAssociation : evidence AlleleGenomicEntityAssociation : evidence_code AlleleGenomicEntityAssociation : internal AlleleGenomicEntityAssociation : obsolete AlleleGenomicEntityAssociation : related_note AlleleGenomicEntityAssociation : relation AlleleGenomicEntityAssociation : updated_by

URI: alliance:AlleleGenomicEntityAssociation

Parent Classes

Children

Slots

Name Description
allele_association_subject None
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence The evidence that supports some assertion.
evidence_code None
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
related_note Holds between an object and a Note object.
relation A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:AlleleGenomicEntityAssociation']
native ['alliance:AlleleGenomicEntityAssociation']

LinkML Specification

Direct

name: AlleleGenomicEntityAssociation
description: Association between an allele and a genomic entity
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AlleleAssociation
abstract: true
slots:
- evidence_code
- related_note
slot_usage:
  relation:
    name: relation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: VocabularyTerm
  evidence:
    name: evidence
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    required: false

Induced

name: AlleleGenomicEntityAssociation
description: Association between an allele and a genomic entity
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AlleleAssociation
abstract: true
slot_usage:
  relation:
    name: relation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: VocabularyTerm
  evidence:
    name: evidence
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    required: false
attributes:
  evidence_code:
    name: evidence_code
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: evidence_code
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AlleleGenomicEntityAssociation
    - GeneToGeneOrthologyCurated
    range: ECOTerm
  related_note:
    name: related_note
    description: Holds between an object and a Note object.
    notes:
    - Singular version of related_notes
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: related_note
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AlleleGenomicEntityAssociation
    - HTPExpressionDatasetAnnotation
    - GeneCluster
    - GeneCollection
    - GeneNomenclatureSet
    - Operon
    range: Note
  allele_association_subject:
    name: allele_association_subject
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    alias: allele_association_subject
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AlleleAssociation
    range: Allele
    required: true
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
    required: false
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: association_slot
    alias: relation
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: VocabularyTerm
    required: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AlleleGenomicEntityAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean