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AlleleGenerationMethodAssociation

None

classDiagram AlleleAssociation <|-- AlleleGenerationMethodAssociation AlleleGenerationMethodAssociation : allele_association_subject AlleleGenerationMethodAssociation : allele_generation_method_association_object AlleleGenerationMethodAssociation : created_by AlleleGenerationMethodAssociation : date_created AlleleGenerationMethodAssociation : date_updated AlleleGenerationMethodAssociation : db_date_created AlleleGenerationMethodAssociation : db_date_updated AlleleGenerationMethodAssociation : evidence AlleleGenerationMethodAssociation : internal AlleleGenerationMethodAssociation : mutation_target_strain AlleleGenerationMethodAssociation : obsolete AlleleGenerationMethodAssociation : relation AlleleGenerationMethodAssociation : updated_by

URI: alliance:AlleleGenerationMethodAssociation

Parent Classes

Slots

Name Description
allele_association_subject None
allele_generation_method_association_object None
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence The evidence that supports some assertion.
internal Classifies the entity as private (for internal use) or not (for public use).
mutation_target_strain The particular strain (solely for and from MGI) that is targeted by the generation method for a particular allele.
obsolete Entity is no longer current.
relation A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
updated_by The individual that last modified the entity.

Mappings

Mapping Type Mapped Value
self ['alliance:AlleleGenerationMethodAssociation']
native ['alliance:AlleleGenerationMethodAssociation']

LinkML Specification

Direct

name: AlleleGenerationMethodAssociation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AlleleAssociation
slots:
- mutation_target_strain
slot_usage:
  relation:
    name: relation
    notes:
    - CV 'Allele Generation Method Association Relation'
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    any_of:
    - equals_string: has_generation_method
attributes:
  allele_generation_method_association_object:
    name: allele_generation_method_association_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    range: GenerationMethod
    required: true

Induced

name: AlleleGenerationMethodAssociation
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AlleleAssociation
slot_usage:
  relation:
    name: relation
    notes:
    - CV 'Allele Generation Method Association Relation'
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    any_of:
    - equals_string: has_generation_method
attributes:
  allele_generation_method_association_object:
    name: allele_generation_method_association_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    alias: allele_generation_method_association_object
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AlleleGenerationMethodAssociation
    range: GenerationMethod
    required: true
  mutation_target_strain:
    name: mutation_target_strain
    description: The particular strain (solely for and from MGI) that is targeted
      by the generation method for a particular allele.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: mutation_target_strain
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AlleleGenerationMethodAssociation
    range: AffectedGenomicModel
  allele_association_subject:
    name: allele_association_subject
    from_schema: https://github.com/alliance-genome/agr_curation_schema/src/schema/allele.yaml
    alias: allele_association_subject
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AlleleAssociation
    range: Allele
    required: true
  evidence:
    name: evidence
    description: The evidence that supports some assertion.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - Note
    - SlotAnnotation
    - EvidenceAssociation
    range: InformationContentEntity
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    notes:
    - CV 'Allele Generation Method Association Relation'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: association_slot
    alias: relation
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: string
    required: true
    any_of:
    - equals_string: has_generation_method
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AlleleGenerationMethodAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean