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AlleleFunctionalImpactSlotAnnotationDTO

None

classDiagram SlotAnnotationDTO <|-- AlleleFunctionalImpactSlotAnnotationDTO AlleleFunctionalImpactSlotAnnotationDTO : created_by_curie AlleleFunctionalImpactSlotAnnotationDTO : date_created AlleleFunctionalImpactSlotAnnotationDTO : date_updated AlleleFunctionalImpactSlotAnnotationDTO : db_date_created AlleleFunctionalImpactSlotAnnotationDTO : db_date_updated AlleleFunctionalImpactSlotAnnotationDTO : evidence_curies AlleleFunctionalImpactSlotAnnotationDTO : functional_impact_names AlleleFunctionalImpactSlotAnnotationDTO : internal AlleleFunctionalImpactSlotAnnotationDTO : obsolete AlleleFunctionalImpactSlotAnnotationDTO : phenotype_statement AlleleFunctionalImpactSlotAnnotationDTO : phenotype_term_curie AlleleFunctionalImpactSlotAnnotationDTO : updated_by_curie

URI: alliance:AlleleFunctionalImpactSlotAnnotationDTO

Parent Classes

Slots

Name Description
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
evidence_curies Curies of InformationContentEntity objects given as evidence
functional_impact_names Name of the VocabularyTerm describing the experimentally assessed functional impact of the allele, e.g. knockout / amorphic
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
phenotype_statement For some MODs, the functional impact of an allele is reported specifically in the context of a particular phenotype. This slot is intended to capture the free-text phenotype statement.
phenotype_term_curie The string representation of the phenotype ontology term (PhenotypeTerm) curie
updated_by_curie Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type Mapped Value
self ['alliance:AlleleFunctionalImpactSlotAnnotationDTO']
native ['alliance:AlleleFunctionalImpactSlotAnnotationDTO']

LinkML Specification

Direct

name: AlleleFunctionalImpactSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
slots:
- functional_impact_names
- phenotype_term_curie
- phenotype_statement
slot_usage:
  phenotype_term:
    name: phenotype_term
    description: For some MODs, the functional impact of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      PhenotypeTerm.
    required: false
  phenotype_statement:
    name: phenotype_statement
    description: For some MODs, the functional impact of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      free-text phenotype statement.
    domain_of:
    - AlleleFunctionalImpactSlotAnnotation
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotation
    - AlleleInheritanceModeSlotAnnotationDTO
    - PhenotypeAnnotationDTO
    required: false

Induced

name: AlleleFunctionalImpactSlotAnnotationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: SlotAnnotationDTO
slot_usage:
  phenotype_term:
    name: phenotype_term
    description: For some MODs, the functional impact of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      PhenotypeTerm.
    required: false
  phenotype_statement:
    name: phenotype_statement
    description: For some MODs, the functional impact of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      free-text phenotype statement.
    domain_of:
    - AlleleFunctionalImpactSlotAnnotation
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotation
    - AlleleInheritanceModeSlotAnnotationDTO
    - PhenotypeAnnotationDTO
    required: false
attributes:
  functional_impact_names:
    name: functional_impact_names
    description: Name of the VocabularyTerm describing the experimentally assessed
      functional impact of the allele, e.g. knockout / amorphic
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AlleleFunctionalImpactSlotAnnotationDTO
    multivalued: true
    alias: functional_impact_names
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AlleleFunctionalImpactSlotAnnotationDTO
    range: string
    required: true
  phenotype_term_curie:
    name: phenotype_term_curie
    description: The string representation of the phenotype ontology term (PhenotypeTerm)
      curie
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: phenotype_term_curie
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotationDTO
    range: string
  phenotype_statement:
    name: phenotype_statement
    description: For some MODs, the functional impact of an allele is reported specifically
      in the context of a particular phenotype. This slot is intended to capture the
      free-text phenotype statement.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: phenotype_statement
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AlleleFunctionalImpactSlotAnnotation
    - AlleleFunctionalImpactSlotAnnotationDTO
    - AlleleInheritanceModeSlotAnnotation
    - AlleleInheritanceModeSlotAnnotationDTO
    - PhenotypeAnnotationDTO
    range: string
    required: false
  evidence_curies:
    name: evidence_curies
    description: Curies of InformationContentEntity objects given as evidence
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: true
    alias: evidence_curies
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - NoteDTO
    - SlotAnnotationDTO
    - EvidenceAssociationDTO
    - GeneGeneAssociationDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AlleleFunctionalImpactSlotAnnotationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean