AgmStrAssociationDTO

None

classDiagram AuditedObjectDTO <|-- AgmStrAssociationDTO AgmStrAssociationDTO : agm_subject_identifier AgmStrAssociationDTO : created_by_curie AgmStrAssociationDTO : date_created AgmStrAssociationDTO : date_updated AgmStrAssociationDTO : db_date_created AgmStrAssociationDTO : db_date_updated AgmStrAssociationDTO : internal AgmStrAssociationDTO : obsolete AgmStrAssociationDTO : relation_name AgmStrAssociationDTO : sequence_targeting_reagent_identifier AgmStrAssociationDTO : updated_by_curie

URI: alliance:AgmStrAssociationDTO

Parent Classes

AuditedObjectDTO
- AgmStrAssociationDTO

Slots

Name	Description
agm_subject_identifier	Curie or internal ID of AGM that is the subject of an association
created_by_curie	Curie of the Person object representing the individual that created the entity
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
relation_name	Name of VocabularyTerm representing relation of an Association
sequence_targeting_reagent_identifier	Identifier (curie/primary_external_id/mod_internal_id) of the STR
updated_by_curie	Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type	Mapped Value
self	['alliance:AgmStrAssociationDTO']
native	['alliance:AgmStrAssociationDTO']

LinkML Specification

Direct

name: AgmStrAssociationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
slots:
- agm_subject_identifier
- sequence_targeting_reagent_identifier
- relation_name

Induced

name: AgmStrAssociationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
attributes:
  agm_subject_identifier:
    name: agm_subject_identifier
    description: Curie or internal ID of AGM that is the subject of an association
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: agm_subject_identifier
    owner: AgmStrAssociationDTO
    domain_of:
    - AgmAgmAssociationDTO
    - AgmAlleleAssociationDTO
    - AgmStrAssociationDTO
    range: string
    required: true
  sequence_targeting_reagent_identifier:
    name: sequence_targeting_reagent_identifier
    description: Identifier (curie/primary_external_id/mod_internal_id) of the STR
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: StrAssociationDTO
    alias: sequence_targeting_reagent_identifier
    owner: AgmStrAssociationDTO
    domain_of:
    - AgmStrAssociationDTO
    - StrAssociationDTO
    - CassetteStrAssociationDTO
    range: string
    required: true
    multivalued: false
  relation_name:
    name: relation_name
    description: Name of VocabularyTerm representing relation of an Association
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: relation_name
    owner: AgmStrAssociationDTO
    domain_of:
    - AgmAgmAssociationDTO
    - AgmAlleleAssociationDTO
    - AgmStrAssociationDTO
    - StrGeneAssociationDTO
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - LocationAssociationDTO
    - ConstructComponentSlotAnnotationDTO
    - ConstructGenomicEntityAssociationDTO
    - ConstructCassetteAssociationDTO
    - CassetteComponentSlotAnnotationDTO
    - CassetteGenomicEntityAssociationDTO
    - CassetteTransgenicToolAssociationDTO
    - CassetteStrAssociationDTO
    - TransgenicToolTransgenicToolAssociationDTO
    range: string
    required: true
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AgmStrAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean