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AgmAlleleAssociationDTO

None

classDiagram AuditedObjectDTO <|-- AgmAlleleAssociationDTO AgmAlleleAssociationDTO : agm_subject_identifier AgmAlleleAssociationDTO : allele_identifier AgmAlleleAssociationDTO : created_by_curie AgmAlleleAssociationDTO : date_created AgmAlleleAssociationDTO : date_updated AgmAlleleAssociationDTO : db_date_created AgmAlleleAssociationDTO : db_date_updated AgmAlleleAssociationDTO : internal AgmAlleleAssociationDTO : obsolete AgmAlleleAssociationDTO : relation_name AgmAlleleAssociationDTO : updated_by_curie AgmAlleleAssociationDTO : zygosity_curie

URI: alliance:AgmAlleleAssociationDTO

Parent Classes

Slots

Name Description
agm_subject_identifier Curie or internal ID of AGM that is the subject of an association
allele_identifier Identifier (curie/primary_external_id/mod_internal_id) of the allele
created_by_curie Curie of the Person object representing the individual that created the entity
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
relation_name Name of VocabularyTerm representing relation of an Association
updated_by_curie Curie of the Person object representing the individual that updated the entity
zygosity_curie Curie of GENO ontology ID for allele zygosity - permissible_values: GENO:0000602 / GENO:0000603 / GENO:0000604 / GENO:0000605 / GENO:0000606 / GENO:0000135 / GENO:0000136 / GENO:0000137 / GENO:0000134

Mappings

Mapping Type Mapped Value
self ['alliance:AgmAlleleAssociationDTO']
native ['alliance:AgmAlleleAssociationDTO']

LinkML Specification

Direct

name: AgmAlleleAssociationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
slots:
- agm_subject_identifier
- allele_identifier
- relation_name
- zygosity_curie

Induced

name: AgmAlleleAssociationDTO
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
attributes:
  agm_subject_identifier:
    name: agm_subject_identifier
    description: Curie or internal ID of AGM that is the subject of an association
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: agm_subject_identifier
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AgmAgmAssociationDTO
    - AgmAlleleAssociationDTO
    - AgmSequenceTargetingReagentAssociationDTO
    range: string
    required: true
  allele_identifier:
    name: allele_identifier
    description: Identifier (curie/primary_external_id/mod_internal_id) of the allele
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: allele_identifier
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - AgmAlleleAssociationDTO
    - AllelePhenotypeAnnotationDTO
    - AlleleDiseaseAnnotationDTO
    - BioSampleGenomicInformationDTO
    range: string
    required: true
  relation_name:
    name: relation_name
    description: Name of VocabularyTerm representing relation of an Association
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: relation_name
    owner: AgmAlleleAssociationDTO
    domain_of:
    - SequenceTargetingReagentGeneAssociationDTO
    - AlleleCellLineAssociationDTO
    - AlleleGenerationMethodAssociationDTO
    - AlleleGenomicEntityAssociationDTO
    - AlleleImageAssociationDTO
    - AlleleOriginAssociationDTO
    - ConstructComponentSlotAnnotationDTO
    - LocationAssociationDTO
    - AgmAgmAssociationDTO
    - AgmAlleleAssociationDTO
    - AgmSequenceTargetingReagentAssociationDTO
    range: string
    required: true
  zygosity_curie:
    name: zygosity_curie
    description: 'Curie of GENO ontology ID for allele zygosity - permissible_values:
      GENO:0000602 / GENO:0000603 / GENO:0000604 / GENO:0000605 / GENO:0000606 / GENO:0000135
      / GENO:0000136 / GENO:0000137 / GENO:0000134'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AgmAlleleAssociationDTO
    alias: zygosity_curie
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AgmAlleleAssociationDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AgmAlleleAssociationDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean