Skip to content

AgmAlleleAssociation

Association (without evidence) between two AffectedGenomicModels

classDiagram Association <|-- AgmAlleleAssociation AgmAlleleAssociation : agm_allele_association_object AgmAlleleAssociation : agm_association_subject AgmAlleleAssociation : created_by AgmAlleleAssociation : date_created AgmAlleleAssociation : date_updated AgmAlleleAssociation : db_date_created AgmAlleleAssociation : db_date_updated AgmAlleleAssociation : internal AgmAlleleAssociation : obsolete AgmAlleleAssociation : relation AgmAlleleAssociation : updated_by AgmAlleleAssociation : zygosity

URI: alliance:AgmAlleleAssociation

Parent Classes

Slots

Name Description
agm_allele_association_object None
agm_association_subject Subject slot to be used for AGM associations
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
relation A high-level grouping for the relationship type. This is analogous to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j this corresponds to the relationship type.
updated_by The individual that last modified the entity.
zygosity GENO ontology ID for allele zygosity

Mappings

Mapping Type Mapped Value
self ['alliance:AgmAlleleAssociation']
native ['alliance:AgmAlleleAssociation']

LinkML Specification

Direct

name: AgmAlleleAssociation
description: Association (without evidence) between two AffectedGenomicModels
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: Association
slots:
- agm_association_subject
- zygosity
attributes:
  agm_allele_association_object:
    name: agm_allele_association_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/affectedGenomicModel
    range: Allele
    required: true

Induced

name: AgmAlleleAssociation
description: Association (without evidence) between two AffectedGenomicModels
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: Association
attributes:
  agm_allele_association_object:
    name: agm_allele_association_object
    from_schema: https://github.com/alliance-genome/agr_curation_schema/affectedGenomicModel
    alias: agm_allele_association_object
    owner: AgmAlleleAssociation
    domain_of:
    - AgmAlleleAssociation
    range: Allele
    required: true
  agm_association_subject:
    name: agm_association_subject
    description: Subject slot to be used for AGM associations
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: agm_association_subject
    owner: AgmAlleleAssociation
    domain_of:
    - AgmAgmAssociation
    - AgmAlleleAssociation
    - AgmSequenceTargetingReagentAssociation
    range: AffectedGenomicModel
    required: true
  zygosity:
    name: zygosity
    description: GENO ontology ID for allele zygosity
    notes:
    - 'permissible_values: GENO:0000602 GENO:0000603 GENO:0000604 GENO:0000605 GENO:0000606
      GENO:0000135 GENO:0000136 GENO:0000137 GENO:0000134'
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AgmAlleleAssociation
    alias: zygosity
    owner: AgmAlleleAssociation
    domain_of:
    - AgmAlleleAssociation
    range: string
  relation:
    name: relation
    description: A high-level grouping for the relationship type. This is analogous
      to category for nodes. In RDF, this corresponds to rdf:predicate and in Neo4j
      this corresponds to the relationship type.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    is_a: association_slot
    alias: relation
    owner: AgmAlleleAssociation
    domain_of:
    - ConstructComponentSlotAnnotation
    - Association
    range: string
    required: true
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AgmAlleleAssociation
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean