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AffectedGenomicModelComponent

Allele that affects the model and its zygosity

classDiagram AuditedObject <|-- AffectedGenomicModelComponent AffectedGenomicModelComponent : created_by AffectedGenomicModelComponent : date_created AffectedGenomicModelComponent : date_updated AffectedGenomicModelComponent : db_date_created AffectedGenomicModelComponent : db_date_updated AffectedGenomicModelComponent : internal AffectedGenomicModelComponent : obsolete AffectedGenomicModelComponent : single_allele AffectedGenomicModelComponent : updated_by AffectedGenomicModelComponent : zygosity

URI: alliance:AffectedGenomicModelComponent

Parent Classes

Slots

Name Description
created_by The individual that created the entity.
date_created The date on which an entity was created. This can be applied to nodes or edges.
date_updated Date on which an entity was last modified.
db_date_created The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal Classifies the entity as private (for internal use) or not (for public use).
obsolete Entity is no longer current.
single_allele None
updated_by The individual that last modified the entity.
zygosity GENO ontology ID for allele zygosity

Mappings

Mapping Type Mapped Value
self ['alliance:AffectedGenomicModelComponent']
native ['alliance:AffectedGenomicModelComponent']

LinkML Specification

Direct

name: AffectedGenomicModelComponent
description: Allele that affects the model and its zygosity
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
slots:
- single_allele
- zygosity

Induced

name: AffectedGenomicModelComponent
description: Allele that affects the model and its zygosity
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObject
attributes:
  single_allele:
    name: single_allele
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    multivalued: false
    alias: single_allele
    owner: AffectedGenomicModelComponent
    domain_of:
    - AlleleDatabaseStatusSlotAnnotation
    - AlleleFullNameSlotAnnotation
    - AlleleFunctionalImpactSlotAnnotation
    - AlleleGermlineTransmissionStatusSlotAnnotation
    - AlleleInheritanceModeSlotAnnotation
    - AlleleMutationTypeSlotAnnotation
    - AlleleNomenclatureEventSlotAnnotation
    - AlleleSecondaryIdSlotAnnotation
    - AlleleSymbolSlotAnnotation
    - AlleleSynonymSlotAnnotation
    - AffectedGenomicModelComponent
    range: Allele
  zygosity:
    name: zygosity
    description: GENO ontology ID for allele zygosity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AffectedGenomicModelComponent
    alias: zygosity
    owner: AffectedGenomicModelComponent
    domain_of:
    - AffectedGenomicModelComponent
    range: zygosity_values
  created_by:
    name: created_by
    description: The individual that created the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: created_by
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    range: Person
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by:
    name: updated_by
    description: The individual that last modified the entity.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObject
    multivalued: false
    alias: updated_by
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    range: Person
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AffectedGenomicModelComponent
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean