AffectedEntityDTO

Ingest class for an entity that is affected by a phenotype.

classDiagram AuditedObjectDTO <|-- AffectedEntityDTO AffectedEntityDTO : created_by_curie AffectedEntityDTO : date_created AffectedEntityDTO : date_updated AffectedEntityDTO : db_date_created AffectedEntityDTO : db_date_updated AffectedEntityDTO : internal AffectedEntityDTO : obsolete AffectedEntityDTO : phenotype_location_dto AffectedEntityDTO : phenotype_process_curie AffectedEntityDTO : phenotype_stage_dto AffectedEntityDTO : updated_by_curie

URI: alliance:AffectedEntityDTO

Parent Classes

AuditedObjectDTO
- AffectedEntityDTO

Slots

Name	Description
created_by_curie	Curie of the Person object representing the individual that created the entity
date_created	The date on which an entity was created. This can be applied to nodes or edges.
date_updated	Date on which an entity was last modified.
db_date_created	The date on which an entity was created in the Alliance database. This is distinct from date_created, which represents the date when the entity was originally created (i.e. at the MOD for imported data).
db_date_updated	Date on which an entity was last modified in the Alliance database. This is distinct from date_updated, which represents the date when the entity was last modified and may predate import into the Alliance database.
internal	Classifies the entity as private (for internal use) or not (for public use).
obsolete	Entity is no longer current.
phenotype_location_dto	The anatomical site that is affected by a phenotype (submitted).
phenotype_process_curie	The biological process that is affected by a phenotype (submitted).
phenotype_stage_dto	The developmental stage that is affected by a phenotype (submitted).
updated_by_curie	Curie of the Person object representing the individual that updated the entity

Mappings

Mapping Type	Mapped Value
self	['alliance:AffectedEntityDTO']
native	['alliance:AffectedEntityDTO']

LinkML Specification

Direct

name: AffectedEntityDTO
description: Ingest class for an entity that is affected by a phenotype.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
slots:
- phenotype_location_dto
- phenotype_stage_dto
- phenotype_process_curie
rules:
- postconditions:
    any_of:
    - slot_conditions:
        phenotype_location_dto:
          name: phenotype_location_dto
          required: true
    - slot_conditions:
        phenotype_stage_dto:
          name: phenotype_stage_dto
          required: true
    - slot_conditions:
        phenotype_process_curie:
          name: phenotype_process_curie
          required: true

Induced

name: AffectedEntityDTO
description: Ingest class for an entity that is affected by a phenotype.
from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
is_a: AuditedObjectDTO
attributes:
  phenotype_location_dto:
    name: phenotype_location_dto
    description: The anatomical site that is affected by a phenotype (submitted).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AffectedEntityDTO
    alias: phenotype_location_dto
    owner: AffectedEntityDTO
    domain_of:
    - AffectedEntityDTO
    range: AnatomicalSiteDTO
    inlined: true
  phenotype_stage_dto:
    name: phenotype_stage_dto
    description: The developmental stage that is affected by a phenotype (submitted).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AffectedEntityDTO
    alias: phenotype_stage_dto
    owner: AffectedEntityDTO
    domain_of:
    - AffectedEntityDTO
    range: TemporalContextDTO
    inlined: true
  phenotype_process_curie:
    name: phenotype_process_curie
    description: The biological process that is affected by a phenotype (submitted).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AffectedEntityDTO
    alias: phenotype_process_curie
    owner: AffectedEntityDTO
    domain_of:
    - AffectedEntityDTO
    range: string
  created_by_curie:
    name: created_by_curie
    description: Curie of the Person object representing the individual that created
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: created_by_curie
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_created:
    name: date_created
    description: The date on which an entity was created. This can be applied to nodes
      or edges.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - creation_date
    exact_mappings:
    - dct:createdOn
    - WIKIDATA_PROPERTY:P577
    alias: date_created
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  updated_by_curie:
    name: updated_by_curie
    description: Curie of the Person object representing the individual that updated
      the entity
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    domain: AuditedObjectDTO
    alias: updated_by_curie
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObjectDTO
    range: string
  date_updated:
    name: date_updated
    description: Date on which an entity was last modified.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    aliases:
    - date_last_modified
    alias: date_updated
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_created:
    name: db_date_created
    description: The date on which an entity was created in the Alliance database.  This
      is distinct from date_created, which represents the date when the entity was
      originally created (i.e. at the MOD for imported data).
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_created
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  db_date_updated:
    name: db_date_updated
    description: Date on which an entity was last modified in the Alliance database.  This
      is distinct from date_updated, which represents the date when the entity was
      last modified and may predate import into the Alliance database.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: db_date_updated
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: datetime
  internal:
    name: internal
    description: Classifies the entity as private (for internal use) or not (for public
      use).
    notes:
    - Default value is true.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: internal
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
    required: true
  obsolete:
    name: obsolete
    description: Entity is no longer current.
    notes:
    - Obsolete entities are preserved in the database for posterity but should not
      be publicly displayed.
    from_schema: https://github.com/alliance-genome/agr_curation_schema/alliance_schema
    alias: obsolete
    owner: AffectedEntityDTO
    domain_of:
    - AuditedObject
    - AuditedObjectDTO
    range: boolean
rules:
- postconditions:
    any_of:
    - slot_conditions:
        phenotype_location_dto:
          name: phenotype_location_dto
          required: true
    - slot_conditions:
        phenotype_stage_dto:
          name: phenotype_stage_dto
          required: true
    - slot_conditions:
        phenotype_process_curie:
          name: phenotype_process_curie
          required: true