Class: VariantTranscriptConsequence

Class for transcript-level VEP results

URI: alliance:VariantTranscriptConsequence

Referenced by class

Attributes

Own

• cdna end _OPT
  • Description: end position of variation in cDNA coordinates
  • range: Integer
• cds end _OPT
  • Description: end position of variation in CDS coordinates
  • range: Integer
• variant transcript consequence➞amino acid reference _OPT
  • Description: Amino acid sequence encoded by codon(s) in reference genome sequence altered by the variant
  • range: BiologicalSequence
• variant transcript consequence➞amino acid variant _OPT
  • Description: Amino acid sequence encoded by codon(s) in variant sequence
  • range: BiologicalSequence
• variant transcript consequence➞cdna start _OPT
  • Description: Start position of variant in cDNA coordinates
  • range: Integer
• variant transcript consequence➞cds start _OPT
  • Description: Start position of variant in CDS coordinates
  • range: Integer
• variant transcript consequence➞cnda end _OPT
  • Description: End position of variant in cDNA coordinates
  • range: String
• variant transcript consequence➞cns end _OPT
  • Description: End position of variant in CDS coordinates
  • range: String
• variant transcript consequence➞codon reference _OPT
  • Description: Reference genome sequence of codon(s) altered by the variant. Bases affected by the variant are given in upper case, bases flanking the variation are given in lower case
  • range: String
• variant transcript consequence➞codon variant _OPT
  • Description: Sequence of codon(s) in variant sequence altered by the variant. Bases affected by the variant are given in upper case, bases flanking the variation are given in lower case
  • range: String
• variant transcript consequence➞hgvs coding nomenclature _OPT
  • Description: HGVS coding sequence (HGVSc) name
  • range: String
• variant transcript consequence➞hgvs protein nomenclature _OPT
  • Description: HGVS protein sequence (HGVSp) name
  • range: String
• variant transcript consequence➞object _REQ
  • Description: object should be the transcript identifier
  • range: Transcript
• variant transcript consequence➞protein end _OPT
  • Description: End position of variant in amino acid sequence
  • range: Integer
• variant transcript consequence➞protein start _OPT
  • Description: Start position of variant in amino acid sequence
  • range: Integer
• variant transcript consequence➞subject _REQ
  • Description: subject should be the variant identifier
  • range: Variant

Other properties

Aliases:		transcript level consequence