Class: Variant

Variant class

URI: alliance:Variant

Parents

• is_a: GenomicEntity

Referenced by class

• GeneGenomicLocation gene genomic location➞subject _REQ Variant
• VariantGeneConsequence variant gene consequence➞subject _REQ Variant
• VariantGenomicLocation variant genomic location➞subject _REQ Variant
• VariantTranscriptConsequence variant transcript consequence➞subject _REQ Variant

Attributes

Own

• computed gene _OPT
  • range: Gene
• cross references _0..*
  • range: String
• data provider _0..*
  • Description: MOD that provided data
  • range: String
• date produced _OPT
  • Description: Date on which an entity was produced.
  • range: Date
• genomic reference sequence _OPT
  • Description: reference genome sequence at variation position
  • range: BiologicalSequence
• genomic variant sequence _OPT
  • Description: variant genome sequence at variation position
  • range: BiologicalSequence
• hgvs nomenclature _OPT
  • Description: HGVSg nomenclature for variant
  • range: String
• id _REQ
  • Description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI
  • range: Uriorcurie
• is variant of allele _OPT
  • range: Allele
• is variant of transcript _OPT
  • range: Transcript
• note _OPT
  • range: String
• padding left _OPT
  • Description: flanking sequence upstream of the variation position on the sense strand of the reference genome
  • range: BiologicalSequence
• padding right _OPT
  • Description: flanking sequence downstream of the variation position on the sense strand of the reference genome
  • range: BiologicalSequence
• protein sequence _OPT
  • range: BiologicalSequence
• references _0..*
  • Description: holds between an object and a reference
  • range: Reference
• release _OPT
  • Description: MOD release ID
  • range: String
• synonyms _OPT
  • range: String
• type _OPT
  • range: Uriorcurie

Inherited from genomic entity:

• genomic locations _0..*
  • range: GeneGenomicLocation
• secondary identifiers _0..*
  • range: String
• taxon _OPT
  • range: Uriorcurie

Other properties

Exact Mappings:		SO:0001059